View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17090_high_3 (Length: 300)
Name: NF17090_high_3
Description: NF17090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17090_high_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 132 - 300
Target Start/End: Original strand, 2831473 - 2831634
Alignment:
| Q |
132 |
aaataattgtattttgaaaggaaccaattttttagttataagcttccctaaaaacaaaattaagttataaacttagcagacatacttataacaatgatca |
231 |
Q |
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| T |
2831473 |
aaataattgtattttgaaaggaaccaatttttaagttataagcttccctaaaaacaaaattaagttataagcttagcagacatactcataacaatgatc- |
2831571 |
T |
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| Q |
232 |
aaaataataaacgaagggggaccaattatggtcatgcttcatttgtttgcttcaaaagtgacaaataaa |
300 |
Q |
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| T |
2831572 |
------ataaaagaagggggaccaattatggtcatgcttcatttgtttgcttcaaaagtgacaaataaa |
2831634 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 2831372 - 2831444
Alignment:
| Q |
49 |
attctcaattgtatatagatatagatatcgtaaatttatgaaaaagaaaactgatataaagtcttgagagaaa |
121 |
Q |
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| T |
2831372 |
attctcaattgtatatagatatagatatcgtaaatttatgaaaaagaaaactgatataaagtcttgagagaaa |
2831444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 2831311 - 2831373
Alignment:
| Q |
12 |
agagaagtgtaacatttaattttagtcaatgtaaatcattctcaattgtatatagatatagat |
74 |
Q |
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| T |
2831311 |
agagaagtgtaacattttattttagtcattgtatatcattctcaattgtatatagatatagat |
2831373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 54940925 - 54940874
Alignment:
| Q |
24 |
catttaattttagtcaatgtaaatcattctcaattgtatatagatatagatat |
76 |
Q |
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| T |
54940925 |
catttaattttggtcattgtaaatcattctcaattgtatata-atatagatat |
54940874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 45445445 - 45445393
Alignment:
| Q |
24 |
catttaattttagtcaatgtaaatcattctcaattgtatatagatatagatat |
76 |
Q |
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| T |
45445445 |
catttaatttaggtcatcgtaaaacattctcaattgtatatagatatagatat |
45445393 |
T |
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