View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17091_high_1 (Length: 642)
Name: NF17091_high_1
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Original strand, 27298179 - 27298794
Alignment:
| Q |
19 |
ctaatgacatattattttaccataaactatggtagttgaacccaaatgattacatgttagaaggaaacaaaatatttcaaacacggacggtactagcaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27298179 |
ctaatgacatattattttaccataaactatggtagttgaacccaaatgattacatgttagaaggaaacaaaatatttcaaacacggacggcactagcaaa |
27298278 |
T |
|
| Q |
119 |
gcaaaagaaaataaaaattcatagcattaataatataatcttctaatgattgtttaattttgaagattaatgaaataaaaacatgattataattgtgcca |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27298279 |
gcaaaagaaaataaaaattcataacattaataatataatcttgtaatgatggtttaattttgaagattaatgaaataaaaacatgattataattgtgcca |
27298378 |
T |
|
| Q |
219 |
cttttttcttcattagtagtttaatcttagtcctacaagtaaatttgtagcaaaatatgtaatgttttaaaaatcgaactgaactagacaattcatctgg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27298379 |
cttttttcttcattagtagtttaatcttagtcctacaagtaaatttgtagcaaaatatgtaatgttttaaaaatcgaactgaactagacaattcaactgg |
27298478 |
T |
|
| Q |
319 |
ttgaacgatacattgatagttttgtcagatgaatcgttgtttaccttaaacaattggtgattataataaaattcatgttttaatttacctttgtatcatc |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27298479 |
ttgaacgatacattgatagttttatcagatgaatcgttgtttaccttaaacaattggtgattataataaaattcatgttttaatttacctttgtatcatc |
27298578 |
T |
|
| Q |
419 |
acttcttccatctcctttagctccaaaatctagcacattaaaagtggtagatgacccaccaatgtaagtttgaggtggaggagtagaaggtgtaacttct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27298579 |
acttcttccatctcctttagctccaaaatctagcacattaaaggtggtagaggacccaccaatgtaagtttgtggtggaggagtagaaggtgtaacttct |
27298678 |
T |
|
| Q |
519 |
tcttgtggaggaggtagtggtggtgagagtgaaggaatgcttttttgtggt---ggagactttgattttgatcctccaccattatggctatgtccattgc |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27298679 |
tcttgtggaggaggtagtggtggtgagagtgaaggaatgcttttttgtggtggaggagactttgattttgatcctccaccattatggctatgtccattgc |
27298778 |
T |
|
| Q |
616 |
catgattctttccttt |
631 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27298779 |
catgattctttccttt |
27298794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University