View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17091_high_10 (Length: 236)
Name: NF17091_high_10
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4181882 - 4181663
Alignment:
| Q |
1 |
cttgggttatttaaaattttatcatttaatttggttaatgatatgtacttggtgtatttcatgttatttatgctcctctctacattaagaagttatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4181882 |
cttgggttatttaaaattttatcatttaatttggttaatgatatgtacttggtgtatttcatgttatttatgctcctctctacattaagaagttatttat |
4181783 |
T |
|
| Q |
101 |
ttctggcctttagtacagattttttgatagggtgaagcaatcattatgttctatagagttgccctttatgaattctttgatcatggttgttttcatgtga |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4181782 |
ttctggcctttagtacagattttttgacagggtgaagcaatcattatgttctatagagttgtcctttatgaattctttgatcatggttgttttcatgtga |
4181683 |
T |
|
| Q |
201 |
ataaattcttgtatagttgg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4181682 |
ataaattcttgtatagttgg |
4181663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4742730 - 4742511
Alignment:
| Q |
1 |
cttgggttatttaaaattttatcatttaatttggttaatgatatgtacttggtgtatttcatgttatttatgctcctctctacattaagaagttatttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4742730 |
cttgggttatttaaaattttatcatttaatttggttaatgatatgtacttggtgtatttcatgttatttatgctcctctctacattaagaagttatttat |
4742631 |
T |
|
| Q |
101 |
ttctggcctttagtacagattttttgatagggtgaagcaatcattatgttctatagagttgccctttatgaattctttgatcatggttgttttcatgtga |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
4742630 |
ttctggcctttagtacagattttttgacagggtgaagcaatcattatgttctatagagttgtcctttatgaattctttgatcatggttgctttcatgtga |
4742531 |
T |
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| Q |
201 |
ataaattcttgtatagttgg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
4742530 |
ataaattcttgtatagttgg |
4742511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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