View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17091_high_5 (Length: 360)
Name: NF17091_high_5
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 28606478 - 28606152
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaacgtaatgttaaattgtaaacaaaaata |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606478 |
atagtctgtggaccaaattcatgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaacgtaatgttaaattgtaaacaaaaata |
28606379 |
T |
|
| Q |
118 |
ttccatgactcccacacttacaaaaataattattttacattaaaaattgtgttattgcatatagttaaatttaaccacattttcgaacatgattaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606378 |
ttccatgactcccacacttacaaaaa-aattattttacattaaaaattgtgttattgcatatagttaaatttaaccacattttcgaacatgattaaccat |
28606280 |
T |
|
| Q |
218 |
tgtcacagataagtgtataaaaagtggatgtccatgtattattaatgtaataaaaggtgcttatgaattatgttttacgtttgactattgaaattttaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28606279 |
tgtcacagataagtgtataaaaagtggatgtccatgtattattaatgtaatgaaaggtgcttatgaattatgttttacgtttgacttttgaaattttaaa |
28606180 |
T |
|
| Q |
318 |
gtaatagtaagtgtgttaatgtaattgg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28606179 |
gtaatagtaagtgtgttaatgtaattgg |
28606152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28636263 - 28636192
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgacca |
89 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
28636263 |
atagtctgtggaccaaattcatgcaatgtactcttccaactgagtgtgctcctgatttaatcaaagtgacca |
28636192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28663833 - 28663761
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
90 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||| || |||||| ||||| ||||||||||||||||||| |
|
|
| T |
28663833 |
atagtctatggaccatattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaa |
28663761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28656757 - 28656685
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
90 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||| || || ||||||||| ||| ||||| ||||||||| |
|
|
| T |
28656757 |
atagtctgtggaccatatttatgcagtgtactcttcccactgaatgtgctcctgattcaatcatagtgaccaa |
28656685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University