View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17091_high_9 (Length: 238)

Name: NF17091_high_9
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17091_high_9
NF17091_high_9
[»] chr6 (12 HSPs)
chr6 (18-89)||(12097200-12097271)
chr6 (181-238)||(12097125-12097182)
chr6 (160-219)||(11936189-11936248)
chr6 (160-219)||(11948169-11948228)
chr6 (90-133)||(17038522-17038565)
chr6 (90-131)||(28241163-28241204)
chr6 (90-131)||(33309288-33309329)
chr6 (90-131)||(33311557-33311598)
chr6 (165-219)||(6402986-6403040)
chr6 (90-131)||(26932403-26932445)
chr6 (90-131)||(2628727-2628768)
chr6 (90-131)||(30034447-30034488)
[»] chr4 (16 HSPs)
chr4 (160-238)||(566296-566374)
chr4 (160-218)||(1533904-1533962)
chr4 (176-219)||(553605-553648)
chr4 (160-218)||(1495836-1495894)
chr4 (160-218)||(1517413-1517471)
chr4 (48-89)||(566406-566447)
chr4 (90-131)||(2484715-2484756)
chr4 (160-219)||(644956-645015)
chr4 (88-131)||(5198854-5198897)
chr4 (160-218)||(3438480-3438538)
chr4 (90-131)||(5635318-5635359)
chr4 (180-221)||(6006452-6006493)
chr4 (90-131)||(8631260-8631301)
chr4 (90-131)||(24348651-24348692)
chr4 (90-131)||(31849440-31849481)
chr4 (166-218)||(53761692-53761744)
[»] chr8 (8 HSPs)
chr8 (161-221)||(44736601-44736661)
chr8 (160-219)||(28246209-28246268)
chr8 (89-132)||(609188-609231)
chr8 (166-217)||(34936083-34936134)
chr8 (90-124)||(4424478-4424512)
chr8 (90-131)||(15809670-15809711)
chr8 (90-131)||(32339762-32339803)
chr8 (89-121)||(3005485-3005517)
[»] chr3 (9 HSPs)
chr3 (160-219)||(1657373-1657432)
chr3 (88-131)||(10955865-10955908)
chr3 (90-131)||(456284-456325)
chr3 (90-131)||(458661-458702)
chr3 (90-131)||(10958163-10958204)
chr3 (88-131)||(41849429-41849472)
chr3 (90-131)||(10191152-10191193)
chr3 (90-131)||(11168478-11168519)
chr3 (90-131)||(51726847-51726888)
[»] scaffold0131 (1 HSPs)
scaffold0131 (90-131)||(14231-14272)
[»] scaffold0038 (1 HSPs)
scaffold0038 (90-131)||(41325-41366)
[»] chr7 (7 HSPs)
chr7 (90-131)||(2935675-2935716)
chr7 (90-131)||(43253358-43253399)
chr7 (160-211)||(7977712-7977763)
chr7 (90-131)||(20299866-20299908)
chr7 (89-131)||(48458059-48458101)
chr7 (90-131)||(1502816-1502857)
chr7 (92-131)||(3036130-3036170)
[»] chr5 (12 HSPs)
chr5 (90-131)||(34479259-34479300)
chr5 (165-218)||(41889473-41889526)
chr5 (161-218)||(41901453-41901510)
chr5 (89-124)||(10587218-10587253)
chr5 (160-218)||(32267599-32267657)
chr5 (90-131)||(4237024-4237065)
chr5 (90-131)||(10750096-10750137)
chr5 (90-131)||(10757572-10757613)
chr5 (90-131)||(21684294-21684335)
chr5 (90-131)||(34476894-34476935)
chr5 (90-131)||(38882484-38882525)
chr5 (88-131)||(3372975-3373019)
[»] chr2 (3 HSPs)
chr2 (90-131)||(19504178-19504219)
chr2 (90-131)||(42453849-42453890)
chr2 (90-131)||(19501843-19501884)
[»] scaffold0014 (1 HSPs)
scaffold0014 (163-219)||(88942-88998)
[»] scaffold0256 (1 HSPs)
scaffold0256 (90-132)||(16614-16656)
[»] scaffold0250 (1 HSPs)
scaffold0250 (93-131)||(3284-3322)
[»] scaffold0025 (1 HSPs)
scaffold0025 (90-124)||(69133-69167)
[»] chr1 (5 HSPs)
chr1 (89-131)||(13447116-13447158)
chr1 (89-131)||(20302838-20302880)
chr1 (90-131)||(13358970-13359011)
chr1 (90-131)||(20291853-20291894)
chr1 (88-124)||(3579429-3579465)
[»] scaffold0068 (1 HSPs)
scaffold0068 (90-131)||(29575-29616)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 12097271 - 12097200
Alignment:
Q  18 atcacaaggctcattctttgcgacaaatccgcaaatctgttcctcattgctaattgtttccccaatttgcaa 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12097271 atcacaaggctcattctttgcgacaaacccgcaaatctgttcctcattgctaattgtttccccaatttgcaa 12097200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 12097182 - 12097125
Alignment:
Q  181 ttttaaggaaatgttgtaacattacacatttgaacttaaacgcctgtagaaatgtgaa 238  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12097182 ttttaaggatatgttgtaacattacacatttgaacttaaccgcctgtaaaaatgtgaa 12097125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 11936189 - 11936248
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| ||||    
T  11936189 ctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaa 11936248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 11948169 - 11948228
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| ||||    
T  11948169 ctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaa 11948228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 17038565 - 17038522
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatgca 133  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  17038565 tgttgtgaatttgatgaaaatcacaccaataaaaacttgatgca 17038522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 28241163 - 28241204
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  28241163 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 28241204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 33309329 - 33309288
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  33309329 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 33309288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 33311598 - 33311557
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  33311598 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 33311557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 6403040 - 6402986
Alignment:
Q  165 gaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    |||||||||  ||| |||||||||| ||||||||||||||  |||||||||||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaa 6402986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 26932403 - 26932445
Alignment:
Q  90 tgttgtgaatttgatgaaaa-tcacaccaataacaatttgatg 131  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  26932403 tgttgtgaatttgatgaaaaatcacaccaataacaacttgatg 26932445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 2628727 - 2628768
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  2628727 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 2628768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 30034447 - 30034488
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  30034447 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 30034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 566374 - 566296
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaaacgcctgtagaaatgtgaa 238  Q
    |||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |  |||||||||||||||    
T  566374 ctgacgaagggattactcatgttttaaggatatgttgtaacattacacatttgaacttaagcagctgtagaaatgtgaa 566296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 1533904 - 1533962
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    ||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||    
T  1533904 ctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaactta 1533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 553648 - 553605
Alignment:
Q  176 tcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  553648 tcatgttttaaggacatgttgtaacattagacatttgaacttaa 553605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 1495836 - 1495894
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    ||||||||||||||  |||||||||||||| ||||||||| || ||||||||| |||||    
T  1495836 ctgaagaaggtattggtcatgttttaaggagatgttgtaagatgacacatttggactta 1495894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 1517413 - 1517471
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    |||||||||||||  ||||||||||||||| ||||||||| || ||||||||| |||||    
T  1517413 ctgaagaaggtatcgatcatgttttaaggagatgttgtaagatgacacatttggactta 1517471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 566447 - 566406
Alignment:
Q  48 gcaaatctgttcctcattgctaattgtttccccaatttgcaa 89  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  566447 gcaaatgtgttcctcattgctaattgttttcccaatttgcaa 566406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 2484715 - 2484756
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  2484715 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 2484756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 645015 - 644956
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    |||||||||||||   ||||||||||| || |||||||||||||| ||||||||| ||||    
T  645015 ctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacatttgaatttaa 644956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 5198897 - 5198854
Alignment:
Q  88 aatgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||||| |||||||||||||||||||| || ||||||    
T  5198897 aatgttgtgaattcgatgaaaatcacaccaataataacttgatg 5198854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 3438480 - 3438538
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    |||| |||||| ||| ||| |||||||||| ||||||||| |||| |||||||||||||    
T  3438480 ctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaactta 3438538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 5635318 - 5635359
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  5635318 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 5635359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 6006493 - 6006452
Alignment:
Q  180 gttttaaggaaatgttgtaacattacacatttgaacttaaac 221  Q
    ||||||||||||||| |||| |||| ||||||||||||||||    
T  6006493 gttttaaggaaatgtagtaagattagacatttgaacttaaac 6006452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 8631260 - 8631301
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  8631260 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 8631301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 24348692 - 24348651
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  24348692 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 24348651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 31849440 - 31849481
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  31849440 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 31849481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 53761692 - 53761744
Alignment:
Q  166 aaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    ||||||||  ||| |||||||||| ||||||||||||||  ||||||||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaactta 53761744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 44736661 - 44736601
Alignment:
Q  161 tgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaaac 221  Q
    |||||||||||||  |||||||||||||| ||||| |||||| |||||||| |||||||||    
T  44736661 tgaagaaggtatttctcatgttttaaggacatgttctaacataacacattttaacttaaac 44736601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 28246209 - 28246268
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| ||||    
T  28246209 ctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaa 28246268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 609231 - 609188
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataacaatttgatgc 132  Q
    |||||||||||| |||||||||| |||||||||||| |||||||    
T  609231 atgttgtgaattcgatgaaaatcgcaccaataacaacttgatgc 609188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 34936083 - 34936134
Alignment:
Q  166 aaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactt 217  Q
    |||||||| ||||||||||||||| ||||||| |||||| ||||||| ||||    
T  34936083 aaggtatttatcatgttttaaggagatgttgtgacattagacatttgtactt 34936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 4424512 - 4424478
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaa 124  Q
    ||||||||||| |||||||||||||||||||||||    
T  4424512 tgttgtgaattcgatgaaaatcacaccaataacaa 4424478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 15809711 - 15809670
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  15809711 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 15809670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 32339803 - 32339762
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  32339803 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 32339762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 3005485 - 3005517
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataa 121  Q
    |||||||||||| ||||||||||||||||||||    
T  3005485 atgttgtgaattcgatgaaaatcacaccaataa 3005517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 1657432 - 1657373
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| ||||    
T  1657432 ctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaa 1657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 10955865 - 10955908
Alignment:
Q  88 aatgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  10955865 aatgttgtgaattcgatgaaaatcacaccaataacaacttgatg 10955908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 456325 - 456284
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  456325 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 458702 - 458661
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  458702 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 10958163 - 10958204
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  10958163 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 10958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 41849472 - 41849429
Alignment:
Q  88 aatgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  41849472 aatgttgcgaattcgatgaaaatcacaccaataacaacttgatg 41849429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 10191152 - 10191193
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| |||| |||||||||||||||||||||||| ||||||    
T  10191152 tgttgcgaatctgatgaaaatcacaccaataacaacttgatg 10191193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 11168519 - 11168478
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  11168519 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 11168478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 51726847 - 51726888
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  51726847 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 51726888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 14231 - 14272
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  14231 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 14272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 41325 - 41366
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  41325 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 41366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 2935716 - 2935675
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  2935716 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 2935675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 43253358 - 43253399
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  43253358 tgttgcgaattcgatgaaaatcacaccaataacaatttgatg 43253399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 7977763 - 7977712
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacattt 211  Q
    ||||||||||||||  ||| |||||||||| |||||||||||||| ||||||    
T  7977763 ctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacattt 7977712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 20299908 - 20299866
Alignment:
Q  90 tgttgtgaatttgatgaaaa-tcacaccaataacaatttgatg 131  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  20299908 tgttgtgaatttgatgaaaaatcacaccaataacaacttgatg 20299866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 48458101 - 48458059
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  48458101 atgttgcgaattcgatgaaaatcacaccaataacaacttgatg 48458059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 1502816 - 1502857
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  1502816 tgttgtgaattcaatgaaaatcacaccaataacaacttgatg 1502857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 3036170 - 3036130
Alignment:
Q  92 ttgtgaatttgatga-aaatcacaccaataacaatttgatg 131  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  3036170 ttgtgaattcgatgagaaatcacaccaataacaatttgatg 3036130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 34479259 - 34479300
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  34479259 tgttgcgaatttgatgaaaatcacaccaataacaacttgatg 34479300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 41889473 - 41889526
Alignment:
Q  165 gaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    |||||||||| ||| |||||||||| |||||||||||||| | |||||||||||    
T  41889473 gaaggtattactcaagttttaaggatatgttgtaacattagatatttgaactta 41889526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 41901453 - 41901510
Alignment:
Q  161 tgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    |||||||||||||  ||| ||||||||||  ||||||||||||| |||||||||||||    
T  41901453 tgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacatttgaactta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 10587253 - 10587218
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataacaa 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  10587253 atgttgtgaattcgatgaaaatcacaccaataacaa 10587218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 32267657 - 32267599
Alignment:
Q  160 ctgaagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaactta 218  Q
    |||||||||||||   |||  ||||||||| |||||||||||||| |||||||||||||    
T  32267657 ctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactta 32267599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 4237065 - 4237024
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| | ||||||||||||||||||||| ||||||    
T  4237065 tgttgtgaattcgttgaaaatcacaccaataacaacttgatg 4237024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 10750137 - 10750096
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  10750137 tgttgtgaattcgatcaaaatcacaccaataacaacttgatg 10750096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 10757613 - 10757572
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  10757613 tgttgtgaattcgatcaaaatcacaccaataacaacttgatg 10757572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 21684294 - 21684335
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  21684294 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 21684335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 34476894 - 34476935
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  34476894 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 34476935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 38882525 - 38882484
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  38882525 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 38882484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 3372975 - 3373019
Alignment:
Q  88 aatgttgtgaatttgatgaaaa-tcacaccaataacaatttgatg 131  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  3372975 aatgttgtgaattcgatgaaaaatcacaccaataacaacttgatg 3373019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 19504178 - 19504219
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  19504178 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 19504219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 42453890 - 42453849
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  42453890 tgttgtgaattcgatgaaaatcacaccaataacaacttgatg 42453849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 19501843 - 19501884
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  19501843 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 19501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 88998 - 88942
Alignment:
Q  163 aagaaggtattaatcatgttttaaggaaatgttgtaacattacacatttgaacttaa 219  Q
    ||||||||||| ||||  ||||||||| ||||||||| |||| ||||||||||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaacttaa 88942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 16656 - 16614
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatgc 132  Q
    ||||||||||| |||||||||||||||||||| || |||||||    
T  16656 tgttgtgaattcgatgaaaatcacaccaataaaaacttgatgc 16614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 3322 - 3284
Alignment:
Q  93 tgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  3322 tgtgaattcgatgaaaatcacaccaataacaacttgatg 3284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 69133 - 69167
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaa 124  Q
    ||||||||||| |||||||||||||||||||||||    
T  69133 tgttgtgaattcgatgaaaatcacaccaataacaa 69167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 13447116 - 13447158
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  13447116 atgttgcgaattcgatgaaaatcacaccaataacaacttgatg 13447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 20302880 - 20302838
Alignment:
Q  89 atgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  20302880 atgttgcgaattcgatgaaaatcacaccaataacaacttgatg 20302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 13359011 - 13358970
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  13359011 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 13358970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 20291894 - 20291853
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  20291894 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 20291853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 3579429 - 3579465
Alignment:
Q  88 aatgttgtgaatttgatgaaaatcacaccaataacaa 124  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  3579429 aatgttgtgaattcgatgaaaaacacaccaataacaa 3579465  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 29616 - 29575
Alignment:
Q  90 tgttgtgaatttgatgaaaatcacaccaataacaatttgatg 131  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  29616 tgttgcgaattcgatgaaaatcacaccaataacaacttgatg 29575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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