View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17091_low_14 (Length: 212)

Name: NF17091_low_14
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17091_low_14
NF17091_low_14
[»] chr5 (26 HSPs)
chr5 (25-115)||(42630711-42630801)
chr5 (25-115)||(8323707-8323797)
chr5 (25-116)||(130253-130344)
chr5 (25-115)||(26534506-26534596)
chr5 (38-118)||(26534685-26534765)
chr5 (38-117)||(5146690-5146769)
chr5 (38-119)||(35454637-35454717)
chr5 (38-113)||(8323895-8323970)
chr5 (38-117)||(42630894-42630973)
chr5 (38-115)||(791592-791669)
chr5 (38-115)||(33377835-33377912)
chr5 (49-117)||(13823148-13823215)
chr5 (36-115)||(5146504-5146582)
chr5 (36-115)||(35454451-35454529)
chr5 (25-115)||(791768-791867)
chr5 (38-115)||(130435-130512)
chr5 (38-119)||(8489119-8489200)
chr5 (49-117)||(14069859-14069926)
chr5 (43-115)||(14388512-14388583)
chr5 (38-121)||(6518390-6518472)
chr5 (38-115)||(40881792-40881867)
chr5 (38-115)||(228717-228794)
chr5 (54-115)||(6518203-6518264)
chr5 (38-115)||(13823335-13823412)
chr5 (38-115)||(19898941-19899018)
chr5 (44-112)||(19897228-19897295)
[»] chr4 (16 HSPs)
chr4 (116-212)||(55694213-55694310)
chr4 (25-118)||(3102537-3102630)
chr4 (25-114)||(13690216-13690305)
chr4 (25-118)||(40533960-40534053)
chr4 (37-115)||(3102726-3102804)
chr4 (25-115)||(9231580-9231670)
chr4 (38-116)||(18936864-18936942)
chr4 (38-115)||(40534150-40534227)
chr4 (49-116)||(11147013-11147080)
chr4 (38-118)||(18381496-18381576)
chr4 (44-117)||(5121000-5121073)
chr4 (38-118)||(37177813-37177893)
chr4 (38-117)||(18936674-18936752)
chr4 (50-118)||(37177621-37177688)
chr4 (53-96)||(9231782-9231825)
chr4 (37-117)||(11147211-11147290)
[»] chr1 (24 HSPs)
chr1 (25-118)||(10227886-10227979)
chr1 (33-111)||(19059378-19059456)
chr1 (38-120)||(10227707-10227789)
chr1 (38-116)||(23346418-23346496)
chr1 (25-113)||(26551992-26552080)
chr1 (38-115)||(26552179-26552256)
chr1 (37-117)||(28217528-28217607)
chr1 (38-117)||(28217706-28217785)
chr1 (36-115)||(50893148-50893226)
chr1 (37-115)||(4156892-4156969)
chr1 (37-115)||(48871247-48871324)
chr1 (37-122)||(7062183-7062267)
chr1 (38-115)||(48871424-48871501)
chr1 (43-115)||(48752586-48752657)
chr1 (37-106)||(23346607-23346675)
chr1 (38-115)||(50892963-50893040)
chr1 (44-115)||(42180571-42180641)
chr1 (38-114)||(50904992-50905070)
chr1 (38-115)||(41833874-41833951)
chr1 (38-106)||(19059565-19059633)
chr1 (38-114)||(39669245-39669321)
chr1 (44-115)||(41834069-41834139)
chr1 (38-84)||(7062038-7062084)
chr1 (38-84)||(42180759-42180805)
[»] scaffold0214 (2 HSPs)
scaffold0214 (25-115)||(11801-11891)
scaffold0214 (38-111)||(11630-11703)
[»] chr2 (22 HSPs)
chr2 (25-115)||(16115218-16115308)
chr2 (25-115)||(31860079-31860169)
chr2 (25-115)||(42028752-42028842)
chr2 (34-115)||(2059490-2059571)
chr2 (25-118)||(7317632-7317725)
chr2 (49-117)||(7317833-7317901)
chr2 (38-117)||(15332849-15332928)
chr2 (49-122)||(36059285-36059358)
chr2 (38-118)||(13280022-13280102)
chr2 (38-118)||(31860272-31860352)
chr2 (38-122)||(42028571-42028655)
chr2 (54-115)||(13279840-13279901)
chr2 (36-114)||(3671822-3671899)
chr2 (38-115)||(31470587-31470663)
chr2 (38-116)||(2059671-2059749)
chr2 (38-115)||(16115046-16115123)
chr2 (49-115)||(38085967-38086032)
chr2 (58-115)||(15330449-15330505)
chr2 (36-121)||(31470763-31470847)
chr2 (38-115)||(38086154-38086231)
chr2 (38-115)||(3672010-3672087)
chr2 (87-116)||(36059247-36059276)
[»] chr8 (11 HSPs)
chr8 (25-115)||(37994708-37994798)
chr8 (38-115)||(37994895-37994972)
chr8 (25-118)||(44036811-44036904)
chr8 (37-115)||(2814430-2814508)
chr8 (49-121)||(41539969-41540040)
chr8 (38-115)||(14193512-14193588)
chr8 (38-117)||(397192-397271)
chr8 (38-116)||(41539769-41539847)
chr8 (49-117)||(2814241-2814308)
chr8 (49-115)||(397007-397072)
chr8 (38-117)||(14193322-14193400)
[»] chr3 (13 HSPs)
chr3 (25-115)||(33219072-33219162)
chr3 (25-116)||(33214613-33214704)
chr3 (25-118)||(10598805-10598898)
chr3 (38-116)||(33214442-33214520)
chr3 (38-115)||(27073095-27073172)
chr3 (25-118)||(36274299-36274392)
chr3 (54-116)||(27072912-27072974)
chr3 (38-115)||(36635425-36635502)
chr3 (38-118)||(19580497-19580577)
chr3 (38-115)||(36274120-36274196)
chr3 (49-112)||(36635241-36635303)
chr3 (53-115)||(10599000-10599062)
chr3 (38-115)||(11651000-11651077)
[»] chr6 (6 HSPs)
chr6 (25-116)||(33022163-33022254)
chr6 (38-114)||(33022355-33022431)
chr6 (37-119)||(21389208-21389289)
chr6 (37-114)||(7789856-7789933)
chr6 (38-115)||(21389021-21389098)
chr6 (37-104)||(7789678-7789744)
[»] scaffold0135 (2 HSPs)
scaffold0135 (25-115)||(37446-37536)
scaffold0135 (53-96)||(37648-37691)
[»] chr7 (10 HSPs)
chr7 (25-115)||(19804797-19804887)
chr7 (38-115)||(40521203-40521280)
chr7 (36-115)||(28948991-28949069)
chr7 (38-115)||(7298635-7298712)
chr7 (49-120)||(7298835-7298905)
chr7 (49-119)||(19805612-19805682)
chr7 (44-117)||(40521014-40521086)
chr7 (37-115)||(16979604-16979681)
chr7 (43-112)||(46567960-46568028)
chr7 (38-84)||(46568145-46568191)
[»] scaffold0140 (1 HSPs)
scaffold0140 (49-121)||(15841-15913)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 42630801 - 42630711
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  42630801 catttatggtggaaaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 8323797 - 8323707
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  8323797 cattcatggtggaaaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 130344 - 130253
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||||||||||||||||||| || ||||||||||||| ||| |||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  130344 catttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 26534596 - 26534506
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || ||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  26534596 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 26534685 - 26534765
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26534685 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttt 26534765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 5146690 - 5146769
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||| ||||||||||||| ||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctctt 5146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 35454637 - 35454717
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttt 119  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttttctttt 35454717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 8323895 - 8323970
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttc 113  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  8323895 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 42630894 - 42630973
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  42630894 aaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaatttttctt 42630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 791669 - 791592
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  791669 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 33377835 - 33377912
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||  ||||||||||||||||| |||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 13823215 - 13823148
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||    
T  13823215 gtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctctt 13823148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 5146582 - 5146504
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||| ||| | ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  5146582 gaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 35454529 - 35454451
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||| ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 791768 - 791867
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgtttta----gttta-----ttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||||||| ||||| |||||||||||||    |||||     |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  791768 catttatggtggaaaaataatgacgtgtcatgttttaatttgtttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 130435 - 130512
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || |||| |||||||| ||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  130435 aaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 8489200 - 8489119
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttt 119  Q
    |||||||||| ||||||| ||||| ||| ||||||||||| ||||||  |||| || |||||||||||||||||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctctttt 8489119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 14069926 - 14069859
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    ||||||||||||| ||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  14069926 gtgtcatgttttaatttgttgtttataagaatgatag-ttaggttcgttcctacacaagaatttctctt 14069859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  43 aatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 6518390 - 6518472
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttt 121  Q
    |||| ||||| || |||| ||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgatag-ttaggttcgttactacacaagaatttctctttttt 6518472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 40881867 - 40881792
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||||||||||||||| || ||   |||||||||||||||||||| ||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 228794 - 228717
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||| | ||||||||||||| |||||||||| |||| ||||||  |||||||||||||||||||  ||||||||    
T  228794 aaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 6518264 - 6518203
Alignment:
Q  54 atgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 13823335 - 13823412
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| || |||||||  ||||||  ||| |||||||||||||||||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 19898941 - 19899018
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||  |||||||||||| ||| |||||| |||  ||||||  |||||||||||||||||||||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  44 atgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaattt 112  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 55694213 - 55694310
Alignment:
Q  116 ttttttaagaaaaagtgtaaaccaaagtaattaaaataaaaatca-tttacaacctgttatggtgatccttctaatattattctgggtacattgatct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  55694213 ttttttaagaaaaagtgtaaaccaaagtaattaaaataaaaatcattttacaacctgttatgttgatccttgtaatattattttgggtacattgatct 55694310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 3102630 - 3102537
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||||||||||||||||||| || || |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3102630 catttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttt 3102537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 13690305 - 13690216
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttct 114  Q
    |||||||||||||||||||| || || |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13690305 catttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 40534053 - 40533960
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||| ||||||||||||||| || || |||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  40534053 cattcatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctcttt 40533960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 3102726 - 3102804
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 9231670 - 9231580
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || ||||||||||||| ||| ||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  9231670 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 18936864 - 18936942
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctct 18936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 40534150 - 40534227
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40534150 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 11147080 - 11147013
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  11147080 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctct 11147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 18381496 - 18381576
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||||||||| ||||||||||||| ||| ||| ||||||| |||| |  ||||||||||||||||||||||||||||||||    
T  18381496 aaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctcttt 18381576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 5121000 - 5121073
Alignment:
Q  44 atgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||  ||||||| |||||||||||||||||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctctt 5121073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 37177813 - 37177893
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||||||||| || |||||||||| ||| ||||||||||| ||||||  ||| ||||||||||| ||||||||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctcttt 37177893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 18936752 - 18936674
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||| ||||| || |||||||||| ||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgatag-ttatgttcgttcatacacaagaatttctctt 18936674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 37177688 - 37177621
Alignment:
Q  50 tgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||||| ||||| ||||||||||||||| |||||| |||   |||||||||||| ||||||||||||||    
T  37177688 tgtcatattttaatttattgtttgtaagaatgata-attgaattcgttcctacagaagaatttctcttt 37177621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  53 catgttttagtttattgtttgtaaggatgatagattaggttcgt 96  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 11147211 - 11147290
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    ||||| |||||  |||||| ||||| ||||||||||||||| || |||| |||| |||||| ||||| |||||||| ||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataatag-ttagattcgtttctacataagaatttttctt 11147290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 10227886 - 10227979
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    ||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10227886 catttatggtggaaaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttt 10227979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 19059456 - 19059378
Alignment:
Q  33 gtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatt 111  Q
    |||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  19059456 gtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 10227789 - 10227707
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttttt 120  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  10227789 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctcatttt 10227707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 23346496 - 23346418
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||| ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 23346418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 26552080 - 26551992
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttc 113  Q
    |||| ||||||||||||||| || ||| ||| ||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  26552080 cattcatggtggaaaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 26552179 - 26552256
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||| ||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  26552179 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28217607 - 28217528
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    ||||| ||||| ||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctctt 28217528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 28217706 - 28217785
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||| ||||||||||||  ||| ||||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  28217706 aaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctctt 28217785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 50893148 - 50893226
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||| ||||| ||||||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  50893148 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgatag-ttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 4156969 - 4156892
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||| ||||| ||||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgatag-ttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 48871324 - 48871247
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||| ||||| ||||||||||||| ||| || |||||||| ||||||| |||||||||||||||||||||||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 7062183 - 7062267
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttta 122  Q
    ||||| ||||| ||||||| ||||| ||| ||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgatag-ttaggttcgttcctacacaaaaatttctctttttta 7062267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 48871424 - 48871501
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| |||  |||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  48871424 aaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  43 aatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaa 106  Q
    ||||| |||||  |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 50893040 - 50892963
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||  ||| ||||||| |||||||| ||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  44 atgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||| ||| ||||||||||  ||| ||| |||||||||||||||||||||||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgctag-ttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagat--taggttcgttcctacacaagaatttct 114  Q
    |||||||||| |||||||||||||  || ||||||||||  |||||| ||  |||||||||||||||||||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 41833951 - 41833874
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||| ||||||||||||| ||| |||| |||||| |||||| ||||| |||||| ||| |||||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19059565 - 19059633
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaa 106  Q
    ||||||| || ||||||| ||||| ||| || ||| |||||||||||| ||||||||||||||||||||    
T  19059565 aaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 39669245 - 39669321
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttct 114  Q
    |||||||| | ||||||||||||| ||| || |||||||| ||||||  ||| ||||||| ||||||||||||||||    
T  39669245 aaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  44 atgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||| ||| ||||||||||  ||| ||| ||| |||||||||||||||||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgctag-ttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgata 84  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 42180759 - 42180805
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgata 84  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 11801 - 11891
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11801 catttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 11703 - 11630
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatt 111  Q
    |||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  11703 aaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 16115218 - 16115308
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16115218 catttatggtggaaaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 31860169 - 31860079
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||||||| ||||| ||||||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  31860169 catttatggtggaaaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 42028752 - 42028842
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||||||||||||| || || |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42028752 catttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 2059571 - 2059490
Alignment:
Q  34 tggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  2059571 tggaaaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 7317725 - 7317632
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| | |||||||||    
T  7317725 catttatggtggaaaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctcttt 7317632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 7317833 - 7317901
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 7317901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 15332849 - 15332928
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctt 15332928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 36059285 - 36059358
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttta 122  Q
    ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  36059285 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctctttttta 36059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 13280022 - 13280102
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    ||||||| || || |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13280022 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttt 13280102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 31860272 - 31860352
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  31860272 aaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctcttt 31860352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 42028655 - 42028571
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttta 122  Q
    ||||||| || ||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  42028655 aaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctcattttta 42028571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  54 atgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 3671899 - 3671822
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttct 114  Q
    |||||| ||||| ||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  3671899 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 31470663 - 31470587
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatag-ttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 2059671 - 2059749
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    ||||||| || ||||||| ||||| ||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  2059671 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctct 2059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 16115123 - 16115046
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||| ||||| ||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  16115123 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 38086032 - 38085967
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  38086032 gtgtcatgttttaatttgttgtttgtaagaatgatag-ttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  58 tttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 31470763 - 31470847
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttt 121  Q
    |||||| ||||| |||||||  |||| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||    
T  31470763 gaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctccttttt 31470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 38086154 - 38086231
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| || |||| ||||| ||| ||||||||||| ||||||  ||||||| || ||||||||| ||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 3672010 - 3672087
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| |||| || ||||| ||| || |||||||  |||||| ||||| ||||||||| || |||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 36059276 - 36059247
Alignment:
Q  87 ttaggttcgttcctacacaagaatttctct 116  Q
    ||||||||||||||||||||||||||||||    
T  36059276 ttaggttcgttcctacacaagaatttctct 36059247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 37994798 - 37994708
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37994798 cattcatggtggaaaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 37994895 - 37994972
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37994895 aaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 44036904 - 44036811
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||| ||||||||||||||| || ||||||||||| | ||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  44036904 cattcatggtggaaaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctcttt 44036811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 2814430 - 2814508
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 41539969 - 41540040
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttt 121  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  41539969 gtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctttttt 41540040  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 397192 - 397271
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||| ||||||||||||| ||| |||||| |||| ||||||  ||||||||||| |||||||||||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctctt 397271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 41539847 - 41539769
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    ||||||| || ||||||| ||||| ||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  41539847 aaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 41539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 2814308 - 2814241
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||| |||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2814308 gtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 2814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 397072 - 397007
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  397072 gtgttatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 14193400 - 14193322
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||||||||| ||||||||||||| ||| ||||||||||  || |||  ||||||||||||||| |||| ||||||||||    
T  14193400 aaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctctt 14193322  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 33219162 - 33219072
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||||||||||||||| |  |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33219162 catttatggtggaaaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 33214613 - 33214704
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||| ||||||||||||||| || ||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33214613 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 10598898 - 10598805
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||| ||||||||||||||| || ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  10598898 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttcccttt 10598805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 33214520 - 33214442
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33214520 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 33214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 27073095 - 27073172
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27073095 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 36274299 - 36274392
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    |||| ||||||||||||||| || ||||||||||||| ||| |||||||||| |||||||| |||| |||||||||||| ||||||||||||||    
T  36274299 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctcttt 36274392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 27072974 - 27072912
Alignment:
Q  54 atgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 27072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 36635425 - 36635502
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||  ||||||  |||||||||||||||||||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 19580497 - 19580577
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttt 118  Q
    ||||||||||  |||||||||||| ||| ||||||||||| ||||||  ||||||||||||||| ||||||||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctcttt 19580577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 36274196 - 36274120
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  36274196 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 36635303 - 36635241
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaattt 112  Q
    ||||||||||||| ||| ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  36635303 gtgtcatgttttaatttgttgtttgtaacaatgatag-ttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  53 catgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||| ||| ||||||||||||||||||  ||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 11651077 - 11651000
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||||||||  | |||| |||||  || ||||||||||| ||||||  |||||||||||| || |||||||||||||    
T  11651077 aaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 33022254 - 33022163
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 116  Q
    |||| ||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  33022254 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctct 33022163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 33022355 - 33022431
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttct 114  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33022355 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 21389208 - 21389289
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttt 119  Q
    ||||| ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttatctttt 21389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttct 114  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| ||||||  |||||||| |||||||||||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 21389098 - 21389021
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| || |||||||||| ||| ||||||||||| ||||||  ||||||||||||||||| |||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacac 104  Q
    |||||||||||  |||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 37536 - 37446
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || ||||||||||||| ||| ||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  37536 cattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  53 catgttttagtttattgtttgtaaggatgatagattaggttcgt 96  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 19804887 - 19804797
Alignment:
Q  25 catttatggtggaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||| ||||||||||||||| || ||||| ||||| | ||| |||||||||||||| |||| |||||||||||||||||||||||||||||    
T  19804887 cattcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 40521203 - 40521280
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  40521203 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 28948991 - 28949069
Alignment:
Q  36 gaaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 7298712 - 7298635
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    |||||||||| ||||||||||||| ||| ||||||||||  ||||||  |||||||||||||||||||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 7298835 - 7298905
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcttttt 120  Q
    |||| |||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  7298835 gtgttatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctcttttt 7298905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 19805612 - 19805682
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttt 119  Q
    ||||||||||||| ||| || ||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  19805612 gtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctctttt 19805682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 40521086 - 40521014
Alignment:
Q  44 atgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctt 117  Q
    |||| ||||||| ||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 40521014  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 16979604 - 16979681
Alignment:
Q  37 aaaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 115  Q
    ||||| ||||| ||||||||||||| ||| || |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatag-ttagattcgttcctacacaagaatttctc 16979681  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  43 aatgaagtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaattt 112  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatag-ttaagttcgttcctacacaagaattt 46567960  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 46568145 - 46568191
Alignment:
Q  38 aaaacaatgaagtgtcatgttttagtttattgtttgtaaggatgata 84  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  46568145 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 46568191  T

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Target: scaffold0140 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 15913 - 15841
Alignment:
Q  49 gtgtcatgttttagtttattgtttgtaaggatgatagattaggttcgttcctacacaagaatttctctttttt 121  Q
    ||||||||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  15913 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctatttt 15841  T

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