View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17091_low_2 (Length: 597)
Name: NF17091_low_2
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Original strand, 42473339 - 42473906
Alignment:
| Q |
19 |
aaacatatttggtggggtggatttttactctgttctgannnnnnnaatcttcctgctaactatctcaattttacaactttaatcttgcacatgtatatct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473339 |
aaacatatttggtggggtggatttttactctgttctgatttttttaatcttcctgctaactatctcaattttacaactttaatcttgcacatgtatatct |
42473438 |
T |
|
| Q |
119 |
aatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473439 |
aatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgct |
42473538 |
T |
|
| Q |
219 |
gaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtg |
318 |
Q |
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| T |
42473539 |
gaagtcttggaattgttcttgtctcgtttggatgttggggataatatccgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtg |
42473638 |
T |
|
| Q |
319 |
tactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatgaccctatgcagcgtaagactattcccttgagttgcca |
418 |
Q |
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|| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473639 |
tagtggaccaatcacctcggcttatgtatttcccaaaaattggtaatttttatgatttttatgaccctatgcagcgtaagactattcccttgagttgcca |
42473738 |
T |
|
| Q |
419 |
gagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgactggcggagtttggacagagattgcattttttctctct |
518 |
Q |
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| T |
42473739 |
gagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgactagcggaggttggacagagatcgcattttttctctct |
42473838 |
T |
|
| Q |
519 |
ttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttt |
586 |
Q |
| |
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| T |
42473839 |
ttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttt |
42473906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 83 - 585
Target Start/End: Original strand, 42478946 - 42479443
Alignment:
| Q |
83 |
tcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaagggac |
182 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
42478946 |
tcaattttacaactttattcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctg------taaaaagtgac |
42479039 |
T |
|
| Q |
183 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
282 |
Q |
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| T |
42479040 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatattggggataatattcgtgcttcagctgttt |
42479139 |
T |
|
| Q |
283 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatga |
382 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42479140 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaaagggtaattgttatgatttctatga |
42479239 |
T |
|
| Q |
383 |
ccctatgcagcgtaaga-ctattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgac |
481 |
Q |
| |
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|||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
42479240 |
ccctgttcagcgtaagacctattcccttgagttgccagagttggatggatgtcgtgtttgctatacaaaagatggttggttattgctaaaccggcaggac |
42479339 |
T |
|
| Q |
482 |
tggcggagtttggacagagattgcattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctg |
581 |
Q |
| |
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|||||||| |||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| | || ||||| |
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| T |
42479340 |
tggcggaggttggacggaaatcacattttctctctctttaatccctttactagggatctgatcacgctgccaaaatttgacaggacatatcaaattgctg |
42479439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 44530274 - 44530222
Alignment:
| Q |
116 |
tctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctg |
168 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
44530274 |
tctaatacttatttttttaagtagaatcaaaggcaatagaagagctactgctg |
44530222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 183 - 476
Target Start/End: Complemental strand, 26047439 - 26047145
Alignment:
| Q |
183 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
282 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| | || ||| || || | |||||||| | | | ||||||| | |||||||| ||||||| |
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| T |
26047439 |
aatttggagctgcaaacatgggctgatctccctgctgaactattagaaatgatcatatctcgtttagccttagaggataatgtccgtgcttctgctgttt |
26047340 |
T |
|
| Q |
283 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatga |
382 |
Q |
| |
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||||||| ||| || ||||||| | ||||||| | | |||||||||| ||| | |||||||| || ||| ||||| | || ||||| || ||||| |
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| T |
26047339 |
gcaagagttggaattttgttgccaatgctgtacgcatggtgaaccaatcaccatggttgatgtattttccgaaatttggtcagtggtatgaattctatga |
26047240 |
T |
|
| Q |
383 |
ccctatgcagcgtaagac-tattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggc |
476 |
Q |
| |
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|||| | ||||| ||||| |||||| ||||||| ||||||||| |||||| | | ||||| || ||||||||||||||||| ||||| |||||| |
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| T |
26047239 |
ccctgttcagcggaagacctattccattgagtttccagagttgaatggatctagagtttgttacacaaaagatggttggttactgctataccggc |
26047145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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