View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17091_low_3 (Length: 467)

Name: NF17091_low_3
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17091_low_3
NF17091_low_3
[»] chr4 (7 HSPs)
chr4 (9-182)||(32649321-32649494)
chr4 (182-293)||(32649169-32649281)
chr4 (271-340)||(32649095-32649164)
chr4 (338-382)||(32225581-32225625)
chr4 (341-380)||(23976706-23976745)
chr4 (343-381)||(44376078-44376116)
chr4 (340-381)||(17558824-17558865)
[»] chr2 (2 HSPs)
chr2 (211-380)||(22136279-22136449)
chr2 (380-436)||(32073854-32073910)
[»] chr5 (7 HSPs)
chr5 (326-382)||(16349713-16349769)
chr5 (326-380)||(4082574-4082628)
chr5 (343-381)||(30096275-30096313)
chr5 (322-380)||(16222687-16222745)
chr5 (338-380)||(40951482-40951524)
chr5 (343-380)||(25099236-25099273)
chr5 (343-380)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (328-382)||(16367864-16367918)
chr8 (328-380)||(42308123-42308175)
chr8 (343-381)||(405353-405391)
chr8 (336-382)||(771642-771688)
chr8 (352-380)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (343-383)||(28947451-28947491)
chr1 (328-386)||(27840301-27840359)
chr1 (338-380)||(51387129-51387171)
chr1 (328-385)||(47250304-47250361)
chr1 (336-380)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (343-382)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (343-380)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (343-380)||(8657064-8657101)
chr6 (343-380)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (335-380)||(53693213-53693258)
chr3 (336-380)||(44708227-44708271)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 32649494 - 32649321
Alignment:
Q  9 gagatgaagcaataaagaacaaggagtagaactttctattataactaattagtttgatagcctgccaatcgttatccttatgcaattcctgatggttaat 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32649494 gagatgaagcaataaagaacaaggagtagaactttctactataactaattagtttgatagcctgccaattgttatccttatgcaattcctgatggttaat 32649395  T
Q  109 atcattgtatgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt 182  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32649394 atctatgtatgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt 32649321  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 32649281 - 32649169
Alignment:
Q  182 tctaatgactaaatatactgtcacataagtttagtgaaacaacaaaacacactacgttacat-cgtatatcacgagaccacacataagtctgtaacaaca 280  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  32649281 tctaatgactaagtatactgtcacataagtttagtgacacaacaaaacacacaacgctacattcgtatatcacgagaccacacataagtttgtaacaaca 32649182  T
Q  281 gacatattctctg 293  Q
    |||||||||||||    
T  32649181 gacatattctctg 32649169  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 32649164 - 32649095
Alignment:
Q  271 tgtaacaacagacatattctctgtgaaaagttcattcatactaaaatatatttcaaataatgtcttaaac 340  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  32649164 tgtaacaacagacatattttctgcgaaaagttcattcatactacaatatatttcaagtaatgtcttaaac 32649095  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 32225625 - 32225581
Alignment:
Q  338 aactatatatgatacgtgcggcagcacgggtggacgatctagttt 382  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  32225625 aactatatatgacccgtgcggcagcaccggtggacgatctagttt 32225581  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 23976745 - 23976706
Alignment:
Q  341 tatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  23976745 tatatatgacccgtgcggcagcacgggtggacgatctagt 23976706  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 44376116 - 44376078
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagtt 381  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  44376116 tatatgacccgtgcggcagcacgggtggacgatctagtt 44376078  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 17558865 - 17558824
Alignment:
Q  340 ctatatatgatacgtgcggcagcacgggtggacgatctagtt 381  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  17558865 ctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 22136449 - 22136279
Alignment:
Q  211 tttagtgaaacaacaaaacacactacgttacatc----gtatatcacgagaccacacataagtctgtaacaacagacatattctctgtgaaaagttcatt 306  Q
    ||||||| |||| ||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||   |    
T  22136449 tttagtggaacagcaaaacacactacgttacatttgtagtatatcacgagaccacacataagtttgtaacaacagacatattctctgcgacaagtt---t 22136353  T
Q  307 catactaaaatatatttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    ||||||| |||||||||| | ||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22136352 catactacaatatatttcgagtaatgtcttaaactatatatgacccgtgcggcaacacgggtggacgatctagt 22136279  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 32073910 - 32073854
Alignment:
Q  380 tttatttattgcagactagcgacaatagtttgacactctttcatacctatcaaaagt 436  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  32073910 tttatttattgcagactagtgacaatagtttgtcgctctttcatacctatcaaaagt 32073854  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 16349769 - 16349713
Alignment:
Q  326 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 382  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  16349769 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagttt 16349713  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 4082574 - 4082628
Alignment:
Q  326 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  4082574 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 30096313 - 30096275
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagtt 381  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30096313 tatatgatccgtgcggcagcacgggtggacgatctagtt 30096275  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 16222687 - 16222745
Alignment:
Q  322 ttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    ||||| |||||| || | |||||||||| | |||||||||||||||| |||||||||||    
T  16222687 ttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 40951482 - 40951524
Alignment:
Q  338 aactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  40951482 aactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 25099273 - 25099236
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25099273 tatatgacccgtgcggcagcacgggtggacgatctagt 25099236  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 25158363 - 25158326
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25158363 tatatgacccgtgcggcagcacgggtggacgatctagt 25158326  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 16367864 - 16367918
Alignment:
Q  328 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 382  Q
    |||||| |||||||||||||||  ||||||||||||||||| |||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 42308175 - 42308123
Alignment:
Q  328 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||| || ||||||||||||  ||||||||||||| |||||||||||||||    
T  42308175 taatgtttttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 405391 - 405353
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagtt 381  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  405391 tatatgacccgtgcggcagcacgggtggacgatctagtt 405353  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 771642 - 771688
Alignment:
Q  336 taaactatatatgatacgtgcggcagcacgggtggacgatctagttt 382  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  771642 taaactatatatgacccgtgcggcagcacgggtagacgacctagttt 771688  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 17695634 - 17695662
Alignment:
Q  352 cgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||||||||||||||||||||||||    
T  17695634 cgtgcggcagcacgggtggacgatctagt 17695662  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 28947491 - 28947451
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagttta 383  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  28947491 tatatgacccgtgcggcagcacgggtggacgatctagttta 28947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 27840359 - 27840301
Alignment:
Q  328 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttattt 386  Q
    |||||| |||||||||| ||||  |||||| |||||||||| |||||||||||| ||||    
T  27840359 taatgttttaaactataaatgacccgtgcgacagcacgggtagacgatctagttcattt 27840301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 51387171 - 51387129
Alignment:
Q  338 aactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  51387171 aactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 47250304 - 47250361
Alignment:
Q  328 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttatt 385  Q
    |||||| || ||||||||||||  ||||||||||| ||| ||||||||||||| ||||    
T  47250304 taatgtttttaactatatatgacccgtgcggcagctcggatggacgatctagtatatt 47250361  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 50293655 - 50293699
Alignment:
Q  336 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    ||||||||||||||  |||||||||||| |||| |||||||||||    
T  50293655 taaactatatatgacccgtgcggcagcatgggtagacgatctagt 50293699  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 31097904 - 31097943
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagttt 382  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31097904 tatatgacccgtgcggcagcacgggtggacgatctagttt 31097943  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 1109 - 1146
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||  |||||||||||||||||||||||||||||    
T  1109 tatatgacccgtgcggcagcacgggtggacgatctagt 1146  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 8657101 - 8657064
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||  |||||||||||||||||||||||||||||    
T  8657101 tatatgacccgtgcggcagcacgggtggacgatctagt 8657064  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 33289107 - 33289070
Alignment:
Q  343 tatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33289107 tatatgacccgtgcggcagcacgggtggacgatctagt 33289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 53693213 - 53693258
Alignment:
Q  335 ttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||||||||||||||   |||||||||||||||| |||||||||||    
T  53693213 ttaaactatatatgacctgtgcggcagcacgggtagacgatctagt 53693258  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 44708271 - 44708227
Alignment:
Q  336 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 380  Q
    |||| |||||||||  ||||||||||||||||| |||||||||||    
T  44708271 taaattatatatgacccgtgcggcagcacgggtagacgatctagt 44708227  T

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