View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17091_low_4 (Length: 422)
Name: NF17091_low_4
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 108 - 406
Target Start/End: Original strand, 11870369 - 11870672
Alignment:
| Q |
108 |
tgtaagaatgatcttgaagctgtgaggaatcagtacccattcgaaccactaaaggtacnnnnnnnnnnn-gtattatcatagttgatcttatgtagtgga |
206 |
Q |
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| T |
11870369 |
tgtaagaaagatcttgaagctgtgaggaatcagtacccattcgaaccactaaaggtactttattttttttgtattatcatagttgatcttatgtagtgga |
11870468 |
T |
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| Q |
207 |
tttgttgttgttttttgtcatgctttattgcatattgttcagt-tgatttgttcagttgatcttagtgttgtg---tacatgctttttgctgtgtgatat |
302 |
Q |
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| T |
11870469 |
tttgttgttgttttttgtcatgctttattgcatattgttcagcatgatttgttcagttgatcttagtattgtggtgtacattctttttgctgtgtgatat |
11870568 |
T |
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| Q |
303 |
taaatgttaattgaatgcatagttatttgttttgatctgaccataaccctgtgaatctgcagtacctgcgaaatactctgcggcttacattcgaagaagg |
402 |
Q |
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| T |
11870569 |
taaatgttaattgaatgcatagttatttgttttgatctgaccataaccctgtgaatctgcagtacctgcgaaatactctgcggcttacatacgaagaagg |
11870668 |
T |
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| Q |
403 |
tatt |
406 |
Q |
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|||| |
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| T |
11870669 |
tatt |
11870672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 11870168 - 11870251
Alignment:
| Q |
27 |
tgtgagtttactggtcttgatgctgaaatgtggattgactgccactatttcgaggtatatctgtcacactggctgattttgtgt |
110 |
Q |
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| T |
11870168 |
tgtgagtttactggtcttgatgctgaaatgcggattgactgccactatttcgaggtatatctgtcacactggctgattttgtgt |
11870251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 3104903 - 3104959
Alignment:
| Q |
108 |
tgtaagaatgatcttgaagctgtgaggaatcagtacccattcgaaccactaaaggta |
164 |
Q |
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| T |
3104903 |
tgtaagaaggatcttgaagctgtggcaaatcagtacccgtttgaacccctaaaggta |
3104959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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