View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17091_low_9 (Length: 249)
Name: NF17091_low_9
Description: NF17091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17091_low_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 4182264 - 4182023
Alignment:
| Q |
13 |
aatattaacattcttatattatggttatattttcataatacatatatgc-ttcatctttgagttttcagatgcaatactagatcatgtcatggatgcagt |
111 |
Q |
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| T |
4182264 |
aatattaacattcttatattatggttatattttcataatacatatatgccttcatctttgagttttcagatgcaatactagatcatgtcatggatgcagt |
4182165 |
T |
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| Q |
112 |
tgacgacttgcgagagaccaaagtagattaa----gatgtgaatgtttattttatcatccattgtacaaagttttgtgcgtgtgaaaaatgcctatttgg |
207 |
Q |
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| T |
4182164 |
tgatgacttgcgagagaccaaagtagattaattaagatgtgaatgtttattttatcatccattgtacaaagttttgtgcgtgtgaaaaatgcctatttgg |
4182065 |
T |
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| Q |
208 |
ggagaataaacataaagtttggtcttcttgaggcatgattgt |
249 |
Q |
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| T |
4182064 |
ggagaataaacataaagtttggtcttcttgaagcatgattgt |
4182023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 4743108 - 4742867
Alignment:
| Q |
13 |
aatattaacattcttatattatggttatattttcataatacatatatgc-ttcatctttgagttttcagatgcaatactagatcatgtcatggatgcagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4743108 |
aatattaacattcttatattatggttatattttcataatacatatatgccttcatctttgagttttcagatgcaatactagatcatgtcatggatgcagt |
4743009 |
T |
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| Q |
112 |
tgacgacttgcgagagaccaaagtagattaa----gatgtgaatgtttattttatcatccattgtacaaagttttgtgcgtgtgaaaaatgcctatttgg |
207 |
Q |
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| T |
4743008 |
tgatgacttgcgagagaccaaagtagattaattaagatgtgaatgtttattttatcatccattgtacaaagttttgtgcgtgtgaaaaatgcctatttgg |
4742909 |
T |
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| Q |
208 |
ggagaataaacataaagtttggtcttcttgaggcatgattgt |
249 |
Q |
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| T |
4742908 |
ggagaataaacataaagtttggtcttcttgaagcatgattgt |
4742867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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