View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_high_1 (Length: 667)

Name: NF17092_high_1
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_high_1
NF17092_high_1
[»] chr8 (4 HSPs)
chr8 (391-657)||(14789288-14789552)
chr8 (114-295)||(14789008-14789186)
chr8 (159-217)||(29640105-29640163)
chr8 (589-657)||(29640743-29640811)
[»] chr2 (3 HSPs)
chr2 (391-655)||(2705533-2705795)
chr2 (114-295)||(2705899-2706080)
chr2 (18-47)||(2706363-2706392)
[»] scaffold0003 (4 HSPs)
scaffold0003 (156-223)||(207621-207688)
scaffold0003 (403-478)||(208111-208186)
scaffold0003 (156-223)||(212673-212740)
scaffold0003 (403-478)||(213163-213238)
[»] chr5 (7 HSPs)
chr5 (403-478)||(22311520-22311595)
chr5 (160-223)||(22311026-22311089)
chr5 (156-223)||(36098081-36098148)
chr5 (404-474)||(24275945-24276015)
chr5 (404-474)||(24386198-24386268)
chr5 (589-658)||(22313671-22313740)
chr5 (403-478)||(36098571-36098646)
[»] scaffold0077 (4 HSPs)
scaffold0077 (156-223)||(47661-47728)
scaffold0077 (403-478)||(48549-48624)
scaffold0077 (403-478)||(58304-58379)
scaffold0077 (156-188)||(39830-39862)
[»] chr3 (1 HSPs)
chr3 (403-478)||(41931940-41932015)
[»] chr6 (1 HSPs)
chr6 (589-657)||(17099198-17099266)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 391 - 657
Target Start/End: Original strand, 14789288 - 14789552
Alignment:
Q  391 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 490  Q
    ||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14789288 cactaagcctcatcatgtgttccttgaacatgtgacaatacaaaatagaaatttgtcaaatcctaaaatggcatcatgtgctctcagtctatgacactcg 14789387  T
Q  491 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtctaagttattcnnnnnnnnnnnnnnnttt 590  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||                ||    
T  14789388 ttatttccacttgtttatctttatccttcgtctgactgtaatttgatcgtctttcagacaattcctgctatctatgttcttcaaaaaaaaaaaaac--tt 14789485  T
Q  591 gttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctttg 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789486 gttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctttg 14789552  T

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Target: chr8; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 14789008 - 14789186
Alignment:
Q  114 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  14789008 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttggccctgctctattgttatgagttcc 14789107  T
Q  214 ttgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgttgctctgtaagttctaatatagacagt 295  Q
    ||||||||||||||||||||||||||||||||||||||   |||| |||||||| |||||||||||||||||||||||||||    
T  14789108 ttgagaatatgctcgcttcatatgagttcctagagaat---atgaatcaaaatgctgctctgtaagttctaatatagacagt 14789186  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 29640105 - 29640163
Alignment:
Q  159 ttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttga 217  Q
    |||||||||||||| |||||||||||||| | ||||||  ||||| ||||||| |||||    
T  29640105 ttgtagtgtcatcactatttcttctacttaatcccgcttcattgtcatgagtttcttga 29640163  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 657
Target Start/End: Original strand, 29640743 - 29640811
Alignment:
Q  589 ttgttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctttg 657  Q
    ||||||||| |||| | ||||||||||||||||  | |||||||||||| |||| |  |||||||||||    
T  29640743 ttgttgtctttgctcggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttg 29640811  T

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Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 391 - 655
Target Start/End: Complemental strand, 2705795 - 2705533
Alignment:
Q  391 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 490  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  2705795 cactaagcctcaccatgtgttccttgaacatgtgacaatgcaaaatagatatttgtcaaatcctgaaatggcatcatgtgctctccgtctatgacattcg 2705696  T
Q  491 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtctaagttattcnnnnnnnnnnnnnnnttt 590  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||                ||    
T  2705695 ttatttccacttgtttatctttgtccttcgtatgactgtaattcgatcgtctttcagacaattcttgctgtctatgttcttcaaaaaaaaaaaatc--tt 2705598  T
Q  591 gttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctt 655  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2705597 gttgtctttgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctt 2705533  T

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Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 114 - 295
Target Start/End: Complemental strand, 2706080 - 2705899
Alignment:
Q  114 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  2706080 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgttatcaatatttcttctacttggccccgctctattgttatgagttcc 2705981  T
Q  214 ttgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgttgctctgtaagttctaatatagacagt 295  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  2705980 ttgagaatatggccgcttcatatgagttcctagagaatatgatgaatcaaaatgctgctcagtaagttctaatatagacagt 2705899  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 2706392 - 2706363
Alignment:
Q  18 gtttcacaataagggtaataatcaatgagt 47  Q
    ||||||||||||||||||||||||||||||    
T  2706392 gtttcacaataagggtaataatcaatgagt 2706363  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 207621 - 207688
Alignment:
Q  156 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 223  Q
    ||||||||||||||||| |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  207621 cacttgtagtgtcatcattatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 207688  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 208111 - 208186
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  208111 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 208186  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 212673 - 212740
Alignment:
Q  156 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 223  Q
    ||||| ||||||||| | |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  212673 cacttttagtgtcataactatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 212740  T

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Target: scaffold0003; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 213163 - 213238
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  213163 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattagatggcatcatgtgatctctgt 213238  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 22311520 - 22311595
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| |||||||||||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  22311520 tcatgtgttccttgaacatgtgacgatgtaaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 22311595  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 22311026 - 22311089
Alignment:
Q  160 tgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 223  Q
    ||||||||||||| |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  22311026 tgtagtgtcatcactatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 22311089  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 36098081 - 36098148
Alignment:
Q  156 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 223  Q
    ||||||||||||||||| |||||||||||||||  ||||||  ||||| || |||||||||| |||||    
T  36098081 cacttgtagtgtcatcactatttcttctacttggtcccgcttcattgtcattagttccttgaaaatat 36098148  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 24275945 - 24276015
Alignment:
Q  404 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 474  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24275945 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24276015  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 24386268 - 24386198
Alignment:
Q  404 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 474  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24386268 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24386198  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 658
Target Start/End: Original strand, 22313671 - 22313740
Alignment:
Q  589 ttgttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctttgc 658  Q
    ||||||||| |||||| ||||||||||||||||  | |||||||||||| |||| |  ||||||||||||    
T  22313671 ttgttgtctttgcttggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttgc 22313740  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 36098571 - 36098646
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | |||| |||||||||| |||||||    
T  36098571 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatagcatcatgtgatctctgt 36098646  T

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Target: scaffold0077 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 47661 - 47728
Alignment:
Q  156 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 223  Q
    ||||||||||||||||| |||||||||||||||   |||||  ||||| ||||||||||||| |||||    
T  47661 cacttgtagtgtcatcactatttcttctacttggttccgcttcattgtcatgagttccttgaaaatat 47728  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 48549 - 48624
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  48549 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 48624  T

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Target: scaffold0077; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 58304 - 58379
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  58304 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 58379  T

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Target: scaffold0077; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 39830 - 39862
Alignment:
Q  156 cacttgtagtgtcatcaatatttcttctacttg 188  Q
    ||||||||||||||||| |||||||||||||||    
T  39830 cacttgtagtgtcatcattatttcttctacttg 39862  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 478
Target Start/End: Complemental strand, 41932015 - 41931940
Alignment:
Q  403 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 478  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  41932015 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattacatggcatcatgtgatctctgt 41931940  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 657
Target Start/End: Complemental strand, 17099266 - 17099198
Alignment:
Q  589 ttgttgtctctgcttgatgctcatattttgccttagttttcttgcatttcgagtccaactttccctttg 657  Q
    ||||||||| |||| | ||||||||||||||||  | |||||||||||| |||| |  |||||||||||    
T  17099266 ttgttgtctttgctcggtgctcatattttgcctctgatttcttgcattttgagttcgtctttccctttg 17099198  T

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