View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_high_10 (Length: 477)
Name: NF17092_high_10
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 41198541 - 41199007
Alignment:
| Q |
1 |
tcatcactgtattcaatttatataattgctaaacttttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttt |
100 |
Q |
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| T |
41198541 |
tcatcactgtattcaatttatataattgctaaacttttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttt |
41198640 |
T |
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| Q |
101 |
tcaattttcatatctattttacatcaagataaagaccccttatttgactttcaagttgactgtcattctgatgtgtaatcttcgtcaatcatggaatatt |
200 |
Q |
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| T |
41198641 |
tcaattttcatatctattttacatcaagataaagaccccttatttgactttcaagttgactgtcattctgatgtgtaatcttcgtcaatcatggaatatt |
41198740 |
T |
|
| Q |
201 |
taatcaaattgcattatgattaaccttcaacataactgtcgatnnnnnnnnnncttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaa |
300 |
Q |
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| T |
41198741 |
taatcaaattgcattatgattaaccttcaacataactgtcgataaaaaaaaaacttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaa |
41198840 |
T |
|
| Q |
301 |
atgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtaca |
400 |
Q |
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| T |
41198841 |
atgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtaca |
41198940 |
T |
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| Q |
401 |
ttgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggttgttatttgtctgtg |
467 |
Q |
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| T |
41198941 |
ttgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggttgttatttgtctgtg |
41199007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 41208525 - 41208590
Alignment:
| Q |
57 |
ttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaattttcatatctattttaca |
123 |
Q |
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| T |
41208525 |
ttttgttgatgcatcattgtttgctatgatgaatgtgttggttttcaa-tttcatatctattttaca |
41208590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 41208842 - 41208928
Alignment:
| Q |
328 |
aacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgta |
414 |
Q |
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| T |
41208842 |
aacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacattgttgatggtgta |
41208928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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