View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_high_11 (Length: 462)

Name: NF17092_high_11
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_high_11
NF17092_high_11
[»] chr2 (3 HSPs)
chr2 (12-344)||(7258115-7258439)
chr2 (406-446)||(7258663-7258703)
chr2 (210-262)||(32502876-32502928)
[»] chr6 (1 HSPs)
chr6 (213-262)||(17437695-17437744)
[»] chr5 (1 HSPs)
chr5 (197-262)||(9900262-9900327)
[»] chr4 (1 HSPs)
chr4 (212-262)||(5162930-5162980)
[»] chr3 (1 HSPs)
chr3 (211-281)||(40860921-40860991)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 7258115 - 7258439
Alignment:
Q  12 aatactgccgaacctcgtgagcaaaaatattttcctaacttttttatttatatttgggcaaaccaatgcatgactttatatttgggcaaaccaatgnnnn 111  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7258115 aatactgccgaacctcgtgagcaaaaatattctgctaacttttttatttatatttgggcaaaccaatgcatgactttatatttgggcaaaccaatgtttt 7258214  T
Q  112 nnnatggcatgtgcgtcacatgagttcaatagttctttaattcttaatcgggtttatatgaatttgaatttgatatannnnnnnnaattaaatcctttgt 211  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  7258215 ttgatggcatgtgcgtcacatgagttcaatagttctttaattcttaatcgggtttatatgaatttgaatttgatat---ttttttaattaaatcctttgt 7258311  T
Q  212 catgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaacattgatttaaaatattaacatagtca-atattagtttgatagtagttt 310  Q
    ||||||||||||||||||||| ||||| ||||||||    ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  7258312 catgtgacaaaaacatatagataaagatctaattaa-ttttttttaataaacactgatttaaaatattaacatagtcagatattagtttgatagtagtt- 7258409  T
Q  311 acagagagagtccgagattaatttagtggtttat 344  Q
        ||||||||||||||||||||||||||||||    
T  7258410 ----agagagtccgagattaatttagtggtttat 7258439  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 7258663 - 7258703
Alignment:
Q  406 cttgtacaaaaacaacacacatggagacaacattacaacct 446  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7258663 cttgtacaaaaacaaaacacatggagacaacattacaacct 7258703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 32502928 - 32502876
Alignment:
Q  210 gtcatgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaa 262  Q
    ||||||||||||||||||| |||||| || |||||| |||||  |||||||||    
T  32502928 gtcatgtgacaaaaacatagagacaatgatctaattgagaaacatttaacaaa 32502876  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 17437695 - 17437744
Alignment:
Q  213 atgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaa 262  Q
    |||||||||||||||| ||||||||| |||||| ||||| ||||||||||    
T  17437695 atgtgacaaaaacatagagacaaagatctaattgagaaacttttaacaaa 17437744  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 9900327 - 9900262
Alignment:
Q  197 aattaaatcctttgtcatgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaa 262  Q
    |||||||||| ||| ||||||||||||||||| | ||||||| |||||| ||||| |||| |||||    
T  9900327 aattaaatcccttgacatgtgacaaaaacatagatacaaagatctaattgagaaacttttgacaaa 9900262  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 5162930 - 5162980
Alignment:
Q  212 catgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaa 262  Q
    ||||||||||||||||| |||||| || |||||||| ||| ||||||||||    
T  5162930 catgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaa 5162980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 40860921 - 40860991
Alignment:
Q  211 tcatgtgacaaaaacatatagacaaagaactaattaagaaatttttaacaaacattgatttaaaatattaa 281  Q
    ||||||||||||||||||||| ||||||  ||||| ||||| |||| ||||| | | |||| |||||||||    
T  40860921 tcatgtgacaaaaacatatagccaaagacttaattgagaaacttttgacaaagactaatttgaaatattaa 40860991  T

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