View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_high_22 (Length: 383)
Name: NF17092_high_22
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 9073097 - 9072749
Alignment:
| Q |
15 |
agagatataatgaaataaagtcatctagtatgtgtgtgcctaacaaggattattttatttatagttgtgatcatacaactatttttctttataannnnnn |
114 |
Q |
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| T |
9073097 |
agagatataatgaaataaagtcatctagtatgtgtgtgcctaactaggatt----tatttatagttgtgatcatacaactatttttctttataatttttt |
9073002 |
T |
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| Q |
115 |
nnnnnnnnngtcaaaaagcatttgattataaatgatgtaaaaatgaatacacggggcatgtcatcgtttggaaattaattttaaaaaggttgagttaggt |
214 |
Q |
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| T |
9073001 |
tttt-----gtcgaaaagcttttgattataaatgatgtaaaaatgaatacacggggcatgtcatcgtttggaaattaattttgaaaaggttgagttaggt |
9072907 |
T |
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| Q |
215 |
ctaacaatagagattaaatgaaggt---tgagtagtcaaaatttacagagaatactaaaaatttgtaatgaagagatnnnnnnngttcaaatggtggatc |
311 |
Q |
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| T |
9072906 |
ctaacaatagagattaaatgaaggttgatgagtagtcaaaatttacagagaatactaaaaatttgtaacgaagagataaaaaaagttcaaatggtggatc |
9072807 |
T |
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| Q |
312 |
tttaccacaattattactctctgaaaatcccataagagtgaagcaatagtgcccattg |
369 |
Q |
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| T |
9072806 |
tttaccacaattattactctctgaaaatcccataagagtgaagcaatagtgcacattg |
9072749 |
T |
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