View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_high_29 (Length: 326)
Name: NF17092_high_29
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 52730777 - 52731082
Alignment:
| Q |
15 |
aatataatagtttcacggtataaccacaaacacaatttaaaaccatgatttccatcgatttttcttcttattttactttaaattaactaactaatgattt |
114 |
Q |
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| T |
52730777 |
aatataatagtttcacggtataaccacaaacacaatttaaaaccatgatttccatcgatttttcttcttattttactttaaattaactaactaatgattt |
52730876 |
T |
|
| Q |
115 |
gtaggttatgagtgggaaaagaaaatttgcatacccgacaagggcaagaccaaagaactgcaagagaaagttgaaagtaatagctggcctctccttcctg |
214 |
Q |
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| T |
52730877 |
gtaggttatgagtgggaaaagaaaatttgcatacccgacaagggcaagaccaaagaactgcaagagaaagttgaaagtaatagctggcctctccttcctg |
52730976 |
T |
|
| Q |
215 |
aac---------nnnnnnnnntggaaactaatcaaatttgcaattaacatattgtaaacttatgttatgtgcaccactaaacttttattttaattagtga |
305 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52730977 |
aacaagaataaaaataaaaaatggaaactattcaaatttgcaattaacatattgtaaacttatgttatgtgcaccactaaacttttatgttaattagtga |
52731076 |
T |
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| Q |
306 |
agataa |
311 |
Q |
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|||||| |
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| T |
52731077 |
agataa |
52731082 |
T |
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