View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17092_high_3 (Length: 636)
Name: NF17092_high_3
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 1368630 - 1369099
Alignment:
| Q |
11 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaatccaccaatgagaagattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1368630 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaggaatccaccaatgagaagattt |
1368729 |
T |
|
| Q |
111 |
gtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagtacgatggatgt |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1368730 |
gtacaacatatttctctaataagaagccgcggttatcctccgatgcatgctcagagatgccagaaataattatcaccgaaattgagagtacgatggatgt |
1368829 |
T |
|
| Q |
211 |
caatcctccagaatttgctgcgata-tcatccaggcttcaattagaggatatttagttcggagagcacttctaaagagtaagaatgtagtgaagttccaa |
309 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1368830 |
taatcctccagaatctgctgcgataatcatccaggcttcaattagaggatatttagttcggagagcacttctaaagagtaagaatgtagtgaagttgcaa |
1368929 |
T |
|
| Q |
310 |
gctgttgttcgcgttcacttggttagaaggcatgatgttggagcatcgcgatgtattcaagctattactaaaatgcaagctctgttttcagctccgaatc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1368930 |
gctgttgttcgcgttcacttggttagaaggcatgatgttggagcatcgcgatgtattcaagctattactaaaatgcaagctctgttttcagttccgaatc |
1369029 |
T |
|
| Q |
410 |
acaattcaacaatgggattaggggtcaatattgcaagaatgaaa-ggggtgaaatttaaggaagatgatt |
478 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1369030 |
acaattcaacaatgggattaggagtcaatattgcaagaatgaaagggggtgaaatttaaggaagatgatt |
1369099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 551 - 616
Target Start/End: Complemental strand, 45525610 - 45525545
Alignment:
| Q |
551 |
agggtattgactgtgaaatagtggagaaaatggaagctcgattaaaagaagacattttaagggaag |
616 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45525610 |
agggtattgactgtgaaagagtggagaaaatggaagctcgattaaaagaagacattttaagggaag |
45525545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 24840896 - 24840976
Alignment:
| Q |
11 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa |
91 |
Q |
| |
|
||||||||||||||| ||||| || | ||||||||||||| |||||||||||| |||||||| |||| ||||||||||||| |
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|
| T |
24840896 |
atgaatgtaactaagggtcagttacctaacgtgaatgttgctgatagttttgtcgccacaatagaagtatacattaaagaa |
24840976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 1369095 - 1369144
Alignment:
| Q |
543 |
tgattcctagggtattgactgtgaaatagtggagaaaatggaagctcgat |
592 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1369095 |
tgattcccagagtattgactgtgaaatagtggagaaaatggaagctcgat |
1369144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 101 - 546
Target Start/End: Original strand, 23571563 - 23572010
Alignment:
| Q |
101 |
gagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagta |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||||| || ||||||| || ||||||||| |||||||||||| |
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|
| T |
23571563 |
gagaagatttgtacaacagatttctctaatgagaagctacagttatcctccaatgcatgctcggatatgccaggaacaattatcaccgaaattgagagta |
23571662 |
T |
|
| Q |
201 |
cgatggatgtcaatcctccagaatttgctgcgata-tcatccaggcttcaattagaggatatttagttcggagagcacttctaaagagtaagaatgtagt |
299 |
Q |
| |
|
| |||||||||||||||| |||| |||||| || | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
23571663 |
tggtggatgtcaatcctccggaatctgctgcattaataatccaggcttcaattagaggatatttggttcggagagcacttctaaatagtaagaatgtagt |
23571762 |
T |
|
| Q |
300 |
gaagttccaagctgttgttcgcgttcacttggttagaaggcatgatgttggagcatcgcgatgtattcaagctattactaaaatgcaagctctgttttca |
399 |
Q |
| |
|
||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| || | |||| |
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| T |
23571763 |
gaaattgcaagctgttgttcgcggacacttggttagaaggcatgctgttggagcatcgcgacatgttcaagctattactaaaatgcaaggtccatcttca |
23571862 |
T |
|
| Q |
400 |
gctccgaatcacaattcaacaatgggattaggggtcaatattgcaagaatgaaaggggtgaaatttaaggaagatgatttgggttttaccttgc-aatct |
498 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||| | | || ||||||||| ||||||| |||||||||||||||| |||||||||| || ||||| |
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|
| T |
23571863 |
gctcctaattacaattcaacaatgggattaggactcattgtcgcgagaatgaaaagggtgaagtttaaggaagatgattggggttttaccgagcaaatct |
23571962 |
T |
|
| Q |
499 |
tcagcctcaattcaaaccgaattttctacccacagttctatggttgat |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
23571963 |
tcagcctcaattcaaaccgaattttctacccacgattttatggttgat |
23572010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 18180068 - 18179988
Alignment:
| Q |
11 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa |
91 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
18180068 |
atgaatgtaactaagtgtcagttaccgaacgtgaatgttgctgacagttttgttgctacaatggaagaatacattaaagaa |
18179988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 5646419 - 5646347
Alignment:
| Q |
18 |
taactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaaga |
90 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
5646419 |
taactaagggtcagttacctaacgtgaatgttgctgatagttttgttgccacaatggaagaatacatgaaaga |
5646347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 26375603 - 26375666
Alignment:
| Q |
11 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatgg |
74 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
26375603 |
atgaatgtaactaagtgtcagttaccgaaagtgaatgttgctgatagttttattgccacaatgg |
26375666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 7657873 - 7657992
Alignment:
| Q |
267 |
tcggagagcacttctaaagagtaagaatgtagtgaagttccaagctgttgttcgcgttcacttggttagaaggcatgatgttggagcatcgcgatgtatt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||| || |
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|
| T |
7657873 |
tcggagagcacttctaaagagtaagaatgcagtgaagttgcaagctgctgttcgtgggcacttggttagaaggcatgctgttggaacattgcgatgtgtt |
7657972 |
T |
|
| Q |
367 |
caagctattactaaaatgca |
386 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
7657973 |
caagctattgctaaaatgca |
7657992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 7657611 - 7657775
Alignment:
| Q |
100 |
tgagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagt |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||| ||||||||| |||| ||||| ||||||||||||| |||| |||| | | ||||| | |
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|
| T |
7657611 |
tgagaagatttgtacaacagatttctctaatgaaaagccgcagttatcctccgatgtctgctcggagatgccagaaacaattgtcaccgagactgagaat |
7657710 |
T |
|
| Q |
200 |
acgatggatgtcaatcctccagaatttgctgcgat-atcatccaggcttcaattagaggatattt |
263 |
Q |
| |
|
| | ||||||||||||| || |||| ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7657711 |
aaggtggatgtcaatccaccggaatctgctgtgataatcatccaggcttcaattagaggatattt |
7657775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 28660106 - 28660058
Alignment:
| Q |
40 |
cgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaa |
88 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28660106 |
cgtgaacgttgctgatagttttggtgccacattggaagaatacattaaa |
28660058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 52900489 - 52900523
Alignment:
| Q |
58 |
ttttgttgccacaatggaagaatacattaaagaat |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52900489 |
ttttgttgccacaatggaagaatacattaaagaat |
52900523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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