View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_high_32 (Length: 320)
Name: NF17092_high_32
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 60 - 319
Target Start/End: Original strand, 23310947 - 23311206
Alignment:
| Q |
60 |
tattgtcttactgggagaacactagagactacgaagccaccctttttaccaccagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaacc |
159 |
Q |
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| T |
23310947 |
tattgtcttactgggagaacactagagactacgaagccaccctttttaccatcagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaacc |
23311046 |
T |
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| Q |
160 |
ctttagaaaaactggtcatctcagaaatgagcttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatctggtt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23311047 |
ctttagaaaaactggtcatctcagaaatgagcttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatctggtt |
23311146 |
T |
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| Q |
260 |
gcaaatttctactctgcggccaccaatgtcgtcgattcctgcgagagaaataattggaat |
319 |
Q |
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| T |
23311147 |
gcaaatttctactctgcggccaccaatgtcgtcgattcctgcgagagaaataattggaat |
23311206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 32069609 - 32069848
Alignment:
| Q |
80 |
actagagactacgaagccaccctttttaccaccagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaaccctttagaaaaactggtcatc |
179 |
Q |
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||||||||||| ||||||||||||||||||||| || | ||||||| |||||||||| || ||||||||||||||||||||||||| |||| ||||||| |
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| T |
32069609 |
actagagactatgaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatc |
32069708 |
T |
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| Q |
180 |
tcagaaatgagcttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatctggttgcaaatttctactctgcggc |
279 |
Q |
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| T |
32069709 |
tcagaaatgagcttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggc |
32069808 |
T |
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| Q |
280 |
caccaatgtcgtcgattcctgcgagagaaataattggaat |
319 |
Q |
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| T |
32069809 |
catcgacatcgtcgattccggcgagagaaatgattggaat |
32069848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 32092623 - 32092862
Alignment:
| Q |
80 |
actagagactacgaagccaccctttttaccaccagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaaccctttagaaaaactggtcatc |
179 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
32092623 |
actagagactatgaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatc |
32092722 |
T |
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| Q |
180 |
tcagaaatgagcttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatctggttgcaaatttctactctgcggc |
279 |
Q |
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|||||||| |||||| |||||| ||||||||||||||||| |||||||||||||| || ||||||| | |||||| |||||| || ||| | || |||| |
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| T |
32092723 |
tcagaaataagctttgaatccacaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatcttgttgcatatctctgccctacggc |
32092822 |
T |
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| Q |
280 |
caccaatgtcgtcgattcctgcgagagaaataattggaat |
319 |
Q |
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||||| |||||||||||| | |||||||| |||||||| |
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| T |
32092823 |
caccagcgtcgtcgattccatcaagagaaatgattggaat |
32092862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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