View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17092_high_35 (Length: 314)
Name: NF17092_high_35
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 5696627 - 5696908
Alignment:
| Q |
19 |
gaggagacgaaaatgtggtgacttgagtttgaatccgggatttcacataaaatatctttacagccaaatcactaactactaatctttcttaattaattcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696627 |
gaggagacgaaaatgtggtgacttgagtttgaatccgggatttcacataaaatatctttacagccaaatcactaactactaatctttcttaattaattcc |
5696726 |
T |
|
| Q |
119 |
agggtagatcatttactccagtccacatggaaaacagtttccgcccattagttttggctagtgatgttgaagaatatgctggcatactaaaaacaaattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5696727 |
agggtagatcatttactccagtccacatggaaaacagtttccgcccattagttttggctagtgatgttgaagaatatgcaggcatactaaaaacaaattc |
5696826 |
T |
|
| Q |
219 |
tgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaaggttaatatatttattgttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696827 |
tgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaaggttaatatatttattgttc |
5696908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 5684604 - 5684696
Alignment:
| Q |
113 |
aattccagggtagatcatttactccagtccacatggaaaacagtttccgcccattagttttggctagtgatgttgaagaatatgctggcatactaa |
208 |
Q |
| |
|
|||||||||||||||| | |||||| ||| ||||| ||| |||||| ||||||||||| | || ||||||||| |||||||| |||||||||| |
|
|
| T |
5684604 |
aattccagggtagatcgatcactccactccgcatgggaaatagtttctgcccattagttctagcaagtgatgtt---gaatatgcaggcatactaa |
5684696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University