View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_high_38 (Length: 283)

Name: NF17092_high_38
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_high_38
NF17092_high_38
[»] chr3 (1 HSPs)
chr3 (1-283)||(23311220-23311502)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 23311502 - 23311220
Alignment:
Q  1 taattacacatacaaaaaacgtgcaacttattaattaattaacttcgatcacaataacacaacttttataagagaaactgagcattatccttatctctat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23311502 taattacacatacaaaaaacgtgtaacttattaattaattaacttcgatcacaataactcaacttttataagagaaactgagcattatccttatctctat 23311403  T
Q  101 tatataactctcgatcacaagagtattattgccaagaggaaccnnnnnnncagcgaaacatttctaacttttcaagcaaacaatggcaccagcaaaaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23311402 tatataactctcgatcacaagagtattattgccaagaggaaccaaaaaaacagcgaaacatttctaacttttcaagcaaacaatggcaccagcaaaaact 23311303  T
Q  201 ctcgattatatagctcagaaaaacaccctcgagtccagtttcatccgggacgaaatcagtcgtccaaaagctgcttacaatca 283  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  23311302 ctcgattatatagctcagaaaaacaccctcgagtctagtttcatccgggacgaaatcagtcgtccaaaagttgcttacaatca 23311220  T

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