View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_high_44 (Length: 247)

Name: NF17092_high_44
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_high_44
NF17092_high_44
[»] chr8 (1 HSPs)
chr8 (19-232)||(43744746-43744959)
[»] chr5 (2 HSPs)
chr5 (23-232)||(28219848-28220057)
chr5 (23-103)||(42555881-42555961)
[»] chr7 (17 HSPs)
chr7 (35-205)||(8646834-8647004)
chr7 (26-232)||(3147194-3147400)
chr7 (23-228)||(6789446-6789651)
chr7 (35-232)||(8659293-8659490)
chr7 (23-229)||(27830904-27831110)
chr7 (43-232)||(1301390-1301579)
chr7 (42-229)||(8654383-8654570)
chr7 (27-229)||(8667352-8667554)
chr7 (27-204)||(17260199-17260376)
chr7 (27-193)||(29581874-29582040)
chr7 (42-193)||(8585754-8585905)
chr7 (47-225)||(10494427-10494605)
chr7 (35-229)||(13333497-13333691)
chr7 (102-171)||(8017521-8017590)
chr7 (103-193)||(7877842-7877932)
chr7 (27-193)||(8570280-8570446)
chr7 (27-123)||(8559372-8559468)
[»] chr2 (9 HSPs)
chr2 (44-232)||(16657567-16657755)
chr2 (42-232)||(43625342-43625532)
chr2 (23-232)||(7542156-7542365)
chr2 (23-232)||(12245435-12245644)
chr2 (42-229)||(14703341-14703528)
chr2 (23-80)||(11999476-11999533)
chr2 (35-168)||(16662033-16662166)
chr2 (42-189)||(12258629-12258776)
chr2 (23-232)||(12234619-12234828)
[»] chr1 (3 HSPs)
chr1 (23-230)||(15594966-15595173)
chr1 (42-232)||(4678606-4678795)
chr1 (27-177)||(34466826-34466976)
[»] chr4 (3 HSPs)
chr4 (42-193)||(30775221-30775372)
chr4 (35-229)||(9335932-9336126)
chr4 (23-134)||(35132476-35132587)
[»] chr6 (1 HSPs)
chr6 (23-94)||(28910650-28910721)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 43744959 - 43744746
Alignment:
Q  19 ggtattccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43744959 ggtattccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggatggtgaactacttcgcagaggagtttaagaagaag 43744860  T
Q  119 aacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccacta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43744859 aacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccacta 43744760  T
Q  219 ttgaggtagattct 232  Q
    ||||||||||||||    
T  43744759 ttgaggtagattct 43744746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 28220057 - 28219848
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  28220057 ttccaagtgaaggccaccgctggaaacactcacctcgggggagaggactttgatagtaggatggtgaactacttcgcagaggagtttaagaagaagaaca 28219958  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||| |||| |||||    
T  28219957 aggtggacattactggaaactcaagagccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattga 28219858  T
Q  223 ggtagattct 232  Q
    ||||||||||    
T  28219857 ggtagattct 28219848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 42555881 - 42555961
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagag 103  Q
    ||||||||||||||||||||||| |||||||||||||  ||||| || || |||| ||||| |||||| ||||| ||||||    
T  42555881 ttccaagtgaaggccacctctggtaacactcacctcgagggagacgacttggatagtaggatggtgaaatactttgcagag 42555961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 8647004 - 8646834
Alignment:
Q  35 gccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacatta 134  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||| | |||| || |||| ||| | || ||||| ||||||||||||||||||||||    
T  8647004 gccaccgctggaaacactcacctcggaggagaggactttgatagtagaatggtggaccactttgcacaagaatttaacaagaagaacaaggtggacatta 8646905  T
Q  135 ctggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgct 205  Q
    |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  8646904 ctggaaactcaagagccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgct 8646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 3147400 - 3147194
Alignment:
Q  26 caagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaagg 125  Q
    ||||| ||||||| | | |||||||| ||||| || |||||||| ||||||||||||| |||||||||||| |||  |||||||||||||||||||||||    
T  3147400 caagttaaggccatcgcaggaaacacccaccttgggggagaggactttgataataggatggtgaactactttgcacgggagtttaagaagaagaacaagg 3147301  T
Q  126 tggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggt 225  Q
    | ||||||| ||  ||| ||||||| ||||||||||||| ||| || || |||||||||||| | | | |||||||||||||  ||||||| |||||| |    
T  3147300 tagacattagtgagaactcaagagccttaaggaggttgaaaacggcgtgtgaaagagcaaaacgaatactatcttttgctgtcatcaccaccattgagat 3147201  T
Q  226 agattct 232  Q
    |||||||    
T  3147200 agattct 3147194  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 6789651 - 6789446
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||  |   ||| |||||||| |||||||||||||||| ||||||||    
T  6789651 ttccaagttaaggccaccggtggaaacactcacctcggaggagaggactttgataaccgattggtaaactactttgcagaggagtttaagaggaagaaca 6789552  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    | ||||| |||||||||||| |||| || ||||| ||||||||||| || || ||||| || ||||||  | | ||||||| ||| ||||| ||||||||    
T  6789551 aagtggatattactggaaactcaagggccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattga 6789452  T
Q  223 ggtaga 228  Q
    ||||||    
T  6789451 ggtaga 6789446  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 8659490 - 8659293
Alignment:
Q  35 gccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacatta 134  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||  || | |||||||||||| | ||||||||| || |||||||| || ||||||||||    
T  8659490 gccacttctggaaacactcaccttggaggagaggactttgatagcagaatggtgaactactttgtagaggagttcaaaaagaagaataaagtggacatta 8659391  T
Q  135 ctggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattct 232  Q
     ||| ||||||| | | ||||||||||||||||| || || || || ||||| |||||| | ||||||||| ||||||||||| ||||||| ||||||    
T  8659390 gtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtcgattct 8659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 27830904 - 27831110
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| ||||| ||  |||||||||||||||| || |||||||| ||||||||||||| ||||||||| || |  |||| ||| ||||||||||| |    
T  27830904 ttccaagttaaggcaactgctggaaacactcaccttggtggagaggactttgataataggatggtgaactattttgtggaggtgttcaagaagaagaaaa 27831003  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
      |||||||||| ||| ||||||||||| || |||||| |||||||   ||| || |  |||||||||||| | |||||| |||||| ||| ||||||||    
T  27831004 gagtggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattga 27831103  T
Q  223 ggtagat 229  Q
    | |||||    
T  27831104 gatagat 27831110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 1301579 - 1301390
Alignment:
Q  43 tggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaac 142  Q
    |||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||| | ||||||||| |  |||||||| || |||||||||| ||| |||    
T  1301579 tggaaatactcaccttggaggagaggactttgataatagaatggtgagctactttgtagaggagttcagaaagaagaataaagtggacattagtggtaac 1301480  T
Q  143 ccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattct 232  Q
    |  | | | ||||||||||||||||  || || || || |||||||||||| | ||||||||| | ||||||||  ||||||| ||||||    
T  1301479 cagaaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccgttgaggtcgattct 1301390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 8654570 - 8654383
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    |||||||||| ||||| || ||||| || |||||||| || | |||| ||||||| | ||||||||| || |||||||| || ||||| ||||  || ||    
T  8654570 ctggaaacacgcacctagggggagaagactttgataacagaatggtgtactactttgtagaggagttcaaaaagaagaataaagtggaaattagcggtaa 8654471  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagat 229  Q
    ||||| | | ||||||||||||||||| || || || || |||||||||| | | |||||| || ||||||||||| |||||||||||    
T  8654470 cccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagat 8654383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 8667554 - 8667352
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggt 126  Q
    ||||||| |||||  | |||||||||||||| || || ||||| || ||||| || | ||||||||| || |  |||||||| || |||||||| || ||    
T  8667554 aagtgaaagccactgcaggaaacactcaccttgggggcgaggacttcgataacagaatggtgaactattttgttgaggagttaaaaaagaagaataaagt 8667455  T
Q  127 ggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggta 226  Q
    |||||| | |   ||||||| | | ||||||||||||||||| || || || || |||||||||| | | ||||||||| |||| |||||| ||||||||    
T  8667454 ggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggta 8667355  T
Q  227 gat 229  Q
    |||    
T  8667354 gat 8667352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 17260376 - 17260199
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaa-gaacaagg 125  Q
    |||| |||||||||  |||| ||||||| || || || ||||| ||||||||||| | |||| |||| || | ||||||| | || ||||| ||| ||      
T  17260376 aagttaaggccaccggtggagacactcatcttgggggtgaggactttgataatagaatggtgtactattttgtagaggagatcaa-aagaacgaaaaaat 17260278  T
Q  126 tggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgc 204  Q
    ||||||||| ||| ||||||| ||| ||||||||||||||||| ||||| |||| ||||||||||||| | ||||||||    
T  17260277 tggacattattgggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttcttttgc 17260199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 29581874 - 29582040
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggt 126  Q
    |||||||||||||  ||||  | |||||||| ||||||||||| ||||||||  | | |||||| ||||| ||  | ||||| |||| |||||||||  |    
T  29581874 aagtgaaggccactgctggcgatactcacctaggaggagaggactttgataaccgaatggtgaattactttgcgaatgagttgaagaggaagaacaattt 29581973  T
Q  127 ggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggaca 193  Q
    |||||||| ||| ||||||| ||| ||||||| | |||||||||| || || || ||||| ||||||    
T  29581974 ggacattagtgggaacccaaaagctttaaggaagctgagaacagcttgtgagagggcaaagaggaca 29582040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 8585754 - 8585905
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    ||||||| |||||||| || |||| ||| |||||||| || | | |||||||||| |  ||||| |||||||  |||||||| ||||| ||||||   ||    
T  8585754 ctggaaatactcaccttgggggaggggactttgataacagaatgttgaactactttgttgaggaatttaagagaaagaacaatgtggatattactaagaa 8585853  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggaca 193  Q
    ||||||||| || ||| |||| ||||| ||||| ||||  ||||||||||||    
T  8585854 cccaagagctttgaggcggttaagaacggcatgtgaaaaggcaaaaaggaca 8585905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 10494427 - 10494605
Alignment:
Q  47 aacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaacccaa 146  Q
    ||||||||||| || |||||||| || ||||| || | |||||| || || |  |||||||| || |||||||| || |||||||| | ||| || ||||    
T  10494427 aacactcaccttgggggagaggacttcgataacagaatggtgaattattttgttgaggagttcaaaaagaagaataacgtggacatcagtgggaatccaa 10494526  T
Q  147 gagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggt 225  Q
     | | ||||||||||||||||| || || || || |||||||||| | | |||||| || ||||||||||  |||||||    
T  10494527 aatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 10494605  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 13333497 - 13333691
Alignment:
Q  35 gccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacatta 134  Q
    |||||| | |||||||||||||| || ||||| || || ||||| || | ||||||||| || |  |||||||| || |||||||| || || || || |    
T  13333497 gccaccgcaggaaacactcaccttgggggagaagacttcgataacagaatggtgaactattttgttgaggagttcaaaaagaagaataacgtcgatatca 13333596  T
Q  135 ctggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagat 229  Q
     ||| ||||||| | | ||||||||||||||||| || || || || | |||||||| | | || ||| || ||||||||||| |||| ||||||    
T  13333597 gtgggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagat 13333691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 8017521 - 8017590
Alignment:
Q  102 aggagtttaagaagaagaacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagc 171  Q
    |||||||||||| ||||||||||  ||| |||| ||||||||| |||||| | ||||||||||| |||||    
T  8017521 aggagtttaagaggaagaacaagaaggatattagtggaaaccctagagcacttaggaggttgaggacagc 8017590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 7877842 - 7877932
Alignment:
Q  103 ggagtttaagaagaagaacaaggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggaca 193  Q
    ||||||||||| |||||| || |||||||||  ||||||||| || ||  | |||||||||||||| ||||| || || || |||||||||    
T  7877842 ggagtttaagaggaagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggaca 7877932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 8570446 - 8570280
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggt 126  Q
    |||| ||||||||  ||||| |||||||||| ||||| || ||||||||||| || | | |||   |||| |   || |||| |||||||||||||| |     
T  8570446 aagtcaaggccactgctggagacactcacctgggaggtgaagattttgataacagaatgttgactcactttgtgaagaagttcaagaagaagaacaacga 8570347  T
Q  127 ggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggaca 193  Q
    ||| |||| | | ||||||| ||| || |||||||| |||||||| || || || ||||||||||||    
T  8570346 ggatattagtaggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaaggaca 8570280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 8559468 - 8559372
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaa 123  Q
    |||| |||||||| || ||| |||| ||||||||||||||||| |||||||| || | ||||||  |||| | | | |||||| ||| |||||||||    
T  8559468 aagtcaaggccacttccggagacacacacctcggaggagaggactttgataacagaatggtgaaacactttgtaaaagagtttgagaggaagaacaa 8559372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 16657567 - 16657755
Alignment:
Q  44 ggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaacc 143  Q
    |||||||||||||| || |||||||| |||||||| || |||||||||||||| | |||||||||| | |||||||| ||||||||||| | ||| |||     
T  16657567 ggaaacactcaccttgggggagaggactttgataacagaacggtgaactactttgtagaggagtttcaaaagaagaataaggtggacataagtgggaact 16657666  T
Q  144 caagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattct 232  Q
    ||||||| || |||||||||||||| ||||| || || ||||| |||||| | ||||||||| ||||||||||| ||||||||||||||    
T  16657667 caagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattct 16657755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 43625532 - 43625342
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    |||||||||||||||| ||||||||||| |||||| |||| | |||||||||||| ||||| || ||| ||||||||||||| ||||| |||| ||||||    
T  43625532 ctggaaacactcaccttggaggagaggactttgatgatagaatggtgaactactttgcagaagaatttgagaagaagaacaatgtggatattattggaaa 43625433  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattct 232  Q
    | |||||||  |||| ||||||||||| |||||||| |||| |||||||||| | |||||||||    ||| |||||||||||||||||||    
T  43625432 ctcaagagccataagaaggttgagaacggcatgcgagagaggaaaaaggacactgtcttttgcttcgttcagcactattgaggtagattct 43625342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 7542365 - 7542156
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| ||||||||  |||| ||||||||||| || ||||| || ||||||||||| | || ||||||||| | | | ||||| ||||  |||||||    
T  7542365 ttccaagttaaggccactgctggcaacactcaccttggtggagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaaca 7542266  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    | |||||||||| ||| || |||| ||| || |||||||||||||| || || || || ||||||||  || | |||||   ||||||  ||||||||||    
T  7542265 aagtggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattga 7542166  T
Q  223 ggtagattct 232  Q
    ||||||||||    
T  7542165 ggtagattct 7542156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 12245435 - 12245644
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| ||| ||||||| ||||  |||||||    
T  12245435 ttccaagttaaggccactgctggaaacactcaccttggaggagaggattttgataatagaatggtaaactactttgcacaggagttcaagagaaagaaca 12245534  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    |  |||| |||| || ||   ||| ||| || ||||| |||||||| || || || || |||||||| | | | || |||  ||||||  | ||||||||    
T  12245535 aattggatattagtgcaagttcaaaagccttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattga 12245634  T
Q  223 ggtagattct 232  Q
    ||||||||||    
T  12245635 ggtagattct 12245644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 14703528 - 14703341
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    ||||||||||||||||||| |||||||| || ||||| || | |||||||||||| |   | ||||| ||||  || ||||   ||||||||| ||||||    
T  14703528 ctggaaacactcacctcgggggagaggacttcgataacagaatggtgaactactttgttcaagagttcaagagaaaaaacagattggacattagtggaaa 14703429  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagat 229  Q
     |||| ||| |||||||| |||||||| || ||||| || |||||||| ||| | |||||    |||||| |||||||||||||||||    
T  14703428 tccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagat 14703341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 11999533 - 11999476
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataata 80  Q
    |||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11999533 ttccaagttaaggccacagctggaaacactcacttcggaggagaggattttgataata 11999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 16662033 - 16662166
Alignment:
Q  35 gccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacatta 134  Q
    ||||| |||||||||||||||||||| |||||||| |||||||| || | | |||||||||| |   | || ||||| | ||||||||| ||||| || |    
T  16662033 gccacttctggaaacactcacctcgggggagaggactttgataacagaatgttgaactactttgtgaaagaatttaataggaagaacaaagtggatatca 16662132  T
Q  135 ctggaaacccaagagcattaaggaggttgagaac 168  Q
    || | || |||||||| || ||||||||||||||    
T  16662133 ctaggaatccaagagccttgaggaggttgagaac 16662166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 12258629 - 12258776
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    |||||||||| ||||| ||||||||||| ||||||||||| | |||||  ||||| | ||| ||||| ||||  |||||||| || || || | ||||||    
T  12258629 ctggaaacacgcaccttggaggagaggactttgataatagaatggtgagttactttgtagaagagttcaagagaaagaacaaagtagatataagtggaaa 12258728  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaag 189  Q
     |||||||| || ||||| |||| |||||| || || || ||||||||    
T  12258729 tccaagagctttgaggagattgaaaacagcttgtgagagtgcaaaaag 12258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 12234828 - 12234619
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| || |||||  | ||||||||||||||||| |||||||| |||||||| || | ||| |||||| | ||  | ||||| || |  ||||| |    
T  12234828 ttccaagttaaagccacagccggaaacactcacctcgggggagaggactttgataacagaatggtaaactaccttgctcaagagttcaatagaaagaaaa 12234729  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    | |||||||| | |||||| |||| ||| || |||||||| ||||| || || || || ||||||||  |||| |||||   ||||||  | || |||||    
T  12234728 aagtggacatgagtggaaatccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattga 12234629  T
Q  223 ggtagattct 232  Q
    ||||||||||    
T  12234628 ggtagattct 12234619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 15595173 - 15594966
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| ||||||||    |||||||||||||| ||||||||||| |||||||| || | ||| |||||||| ||  |||| || |||| ||||||||    
T  15595173 ttccaagttaaggccacaggcggaaacactcaccttggaggagaggactttgataacagaatggtcaactactttgcgcaggaattcaagacgaagaaca 15595074  T
Q  123 aggtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattga 222  Q
    | ||||| |||||||| |||||||| || || ||||| |||||||| || |||||||| |||||||||  | | |||||| ||  |||||| || |||||    
T  15595073 aagtggatattactgggaacccaagggccttgaggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattga 15594974  T
Q  223 ggtagatt 230  Q
    ||||||||    
T  15594973 ggtagatt 15594966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 4678606 - 4678795
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    |||||||||||||||| || |||||||| |||||||| || | |||||||||||| | ||||||||| || |||||||| || |||||||||| |   ||    
T  4678606 ctggaaacactcacctaggtggagaggactttgataacagaatggtgaactactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaa 4678705  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattct 232  Q
    | ||| | | ||||||||||||||||| || ||||| || ||||| |||||| | ||||| ||  ||||||||||| |||| |||||||||    
T  4678706 cgcaaaacccttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttga-gtagattct 4678795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 34466826 - 34466976
Alignment:
Q  27 aagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggt 126  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||| ||||||||||| | || |||| |||| ||| ||||||| |||| |||| | ||       
T  34466826 aagttaaggccacttctggtaacactcacctcggacgagaggactttgataatagaatggcgaaccactttgcaaaggagttcaagaggaagcataataa 34466925  T
Q  127 ggacattactggaaacccaagagcattaaggaggttgagaacagcatgcga 177  Q
    ||| |||| ||||||||| ||||| || |||||||||||||| || |||||    
T  34466926 ggatattagtggaaaccctagagctttgaggaggttgagaactgcgtgcga 34466976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 30775372 - 30775221
Alignment:
Q  42 ctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 141  Q
    |||||||||||||| |||| |||||||| |||||||| || | | |||| ||||| | |||||| ||||||| ||||||||| ||||||||||| || ||    
T  30775372 ctggaaacactcacatcgggggagaggactttgataacagaatgttgaattactttgtagaggaatttaagacgaagaacaacgtggacattaccgggaa 30775273  T
Q  142 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggaca 193  Q
     |||||||| || ||   ||||||||| ||||| ||||  ||||||||||||    
T  30775272 tccaagagctttgagacagttgagaactgcatgtgaaaaggcaaaaaggaca 30775221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 9335932 - 9336126
Alignment:
Q  35 gccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacatta 134  Q
    |||||| | |||||||| ||||| ||||| ||||| |||||||| || | ||| ||||| || |  || ||||| || |||||||| || |||||||| |    
T  9335932 gccaccgcaggaaacacgcaccttggaggcgaggactttgataacagaatggttaactattttgtggaagagttaaaaaagaagaataaagtggacatca 9336031  T
Q  135 ctggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagat 229  Q
         ||||||| | | ||||||||||||||||| || || || || |||||||||| | | ||||||||| |||| |||||| |||||||||||    
T  9336032 agcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagat 9336126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 35132587 - 35132476
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactacttcgcagaggagtttaagaagaagaaca 122  Q
    |||||||| ||||||||  | ||||||||||| ||||| |||||||| |||||||| || | |||||||||||| | | | ||||| ||||  |||||||    
T  35132587 ttccaagttaaggccactgccggaaacactcatctcggtggagaggactttgataacagaatggtgaactactttgtacaagagttcaagagaaagaaca 35132488  T
Q  123 aggtggacatta 134  Q
    | || |||||||    
T  35132487 aagtagacatta 35132476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 28910721 - 28910650
Alignment:
Q  23 ttccaagtgaaggccacctctggaaacactcacctcggaggagaggattttgataataggacggtgaactac 94  Q
    |||||||| ||||||||| ||||||||||||||||||| |  |||||  |||||||||||| ||||||||||    
T  28910721 ttccaagttaaggccaccgctggaaacactcacctcggggtcgaggacattgataataggatggtgaactac 28910650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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