View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17092_low_10 (Length: 481)
Name: NF17092_low_10
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_10 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 34925538 - 34925085
Alignment:
| Q |
19 |
ttcgaaagcagaaagaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctat |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925538 |
ttcgaaagcagaaggaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctat |
34925439 |
T |
|
| Q |
119 |
tgaaattcataagcgcgaagcacaagttgctgaaggtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaa |
218 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34925438 |
tgaaattcgtaagcgcgaagctgaagttgctgaaggtaacatcaaaagtaagcggcagaagaagcaagtgttggaggcttaagatgaaggacatccaaaa |
34925339 |
T |
|
| Q |
219 |
tttatatgttagacttcttataaagaatatttataggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34925338 |
tttatatgttagacttcttataaagaatatttataggagtaggtgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttat |
34925239 |
T |
|
| Q |
319 |
catgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataact |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925238 |
catgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataact |
34925139 |
T |
|
| Q |
419 |
tctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
34925138 |
tctgcaatttgtctatgtttaaacttctggttttgaatcattctccagaattat |
34925085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 54 - 472
Target Start/End: Complemental strand, 34935405 - 34934990
Alignment:
| Q |
54 |
aagcagaaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaag |
153 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||| |
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|
| T |
34935405 |
aagcaggaagccgttgaacttcgaaagcagagagctgaagctcgtaagcagaaagctgaagctgttgaaattcgtaagcgtgaagctgaagttgctgaag |
34935306 |
T |
|
| Q |
154 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
34935305 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatctatatgttagacttcttatatagaatatttata |
34935206 |
T |
|
| Q |
254 |
ggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtg |
353 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||| | |
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|
| T |
34935205 |
ggagtaggtgcttaaataaatcattctcaatgctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggagggag |
34935109 |
T |
|
| Q |
354 |
ataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgtctatgtttaaacttctgattttt |
453 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| || ||||| |||| |
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| T |
34935108 |
agaatcaagctctcgaatcttggtctatgtgtgtcttgttattctgtactatctcctatatgactactgcaatttgtctatgtgtagtattctggttttg |
34935009 |
T |
|
| Q |
454 |
aatcattctccagaattat |
472 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
34935008 |
aattattatccagaattat |
34934990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 54 - 472
Target Start/End: Complemental strand, 34929865 - 34929450
Alignment:
| Q |
54 |
aagcagaaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaag |
153 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
34929865 |
aagcagaaagctgctgaacttcgaaagcagagagctgaagctcgtaagcagaaagccgaagctgttgaaattcgtaagcgtgaagctgaagttgctgaag |
34929766 |
T |
|
| Q |
154 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
34929765 |
gtaacatcaaaagtaagcggcagaagaagtaagtgctggaggcttaagatgaaggacatccaaaatctatatgtttgacttcttatatagaatatttata |
34929666 |
T |
|
| Q |
254 |
ggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtg |
353 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||| |||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||| | |
|
|
| T |
34929665 |
ggagtaggtgcttaaataaatcattctcaattctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggagggag |
34929569 |
T |
|
| Q |
354 |
ataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgtctatgtttaaacttctgattttt |
453 |
Q |
| |
|
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||| |||| |
|
|
| T |
34929568 |
agaatcaagctctcgaatcttggtctatgtgtgtcttgttattctgtactatttcctatatgactactgcaatttgtctatgtgtagtattctggttttg |
34929469 |
T |
|
| Q |
454 |
aatcattctccagaattat |
472 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
34929468 |
aattattctccagaattat |
34929450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 34928784 - 34928592
Alignment:
| Q |
19 |
ttcgaaagcagaaagaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctat |
118 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
34928784 |
ttcgaaagaagaagcaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaagcagagagctgaagttcgtaagcagaaagctgaagctgt |
34928685 |
T |
|
| Q |
119 |
tgaaattcataagcgcgaagcacaagttgctgaaggtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggaca |
211 |
Q |
| |
|
|||||||| ||||| |||||| ||||| ||||||| | ||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
34928684 |
tgaaattcgtaagcacgaagctgaagtttctgaaggcatcatcagaagtaagcggcagaagaagcacgtgttggaggcttaagatgaaggaca |
34928592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 32683559 - 32683670
Alignment:
| Q |
301 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
400 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
|
|
| T |
32683559 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32683652 |
T |
|
| Q |
401 |
actatttcctatataact |
418 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
32683653 |
actgattcctatataact |
32683670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 32685269 - 32685380
Alignment:
| Q |
301 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
400 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
|
|
| T |
32685269 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32685362 |
T |
|
| Q |
401 |
actatttcctatataact |
418 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
32685363 |
actgattcctatataact |
32685380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 34935470 - 34935410
Alignment:
| Q |
19 |
ttcgaaagcagaaagaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaa |
79 |
Q |
| |
|
|||| |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34935470 |
ttcgcaagcagaagcaggtagctgctgaagtccgtaagcaggaagccgctgaacttcgaaa |
34935410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 28699345 - 28699374
Alignment:
| Q |
386 |
gtcttgttattctgtactatttcctatata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28699345 |
gtcttgttattctgtactatttcctatata |
28699374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 34928838 - 34928778
Alignment:
| Q |
19 |
ttcgaaagcagaaagaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaa |
79 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
34928838 |
ttcgaaaacagaagcagaaagccgctgaagttcgaaagcaggaagccgctgaacttcgaaa |
34928778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 34929954 - 34929894
Alignment:
| Q |
19 |
ttcgaaagcagaaagaggaagctgctgaagtttgtaagcagaaagccgctgaacttcgaaa |
79 |
Q |
| |
|
|||| |||||||| ||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
34929954 |
ttcgcaagcagaagcaggtagctgctgaagtccgtaagcaagaagccgctgaacttcgaaa |
34929894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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