View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_12 (Length: 466)
Name: NF17092_low_12
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 3698957 - 3698680
Alignment:
| Q |
11 |
taattctactgttactattctcttcattg----taacaaccatatttcaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccat |
106 |
Q |
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| T |
3698957 |
taattctactgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccat |
3698858 |
T |
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| Q |
107 |
ctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgactt |
206 |
Q |
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| T |
3698857 |
ctcaataaggttcatgttctgcaactgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgactt |
3698758 |
T |
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| Q |
207 |
ccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgcggca |
284 |
Q |
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| T |
3698757 |
ccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgcggca |
3698680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 3703777 - 3703628
Alignment:
| Q |
131 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgca |
230 |
Q |
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| T |
3703777 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctggcttccaccataaatcctctggaatgca |
3703678 |
T |
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| Q |
231 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgc |
280 |
Q |
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| T |
3703677 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgc |
3703628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 329 - 453
Target Start/End: Complemental strand, 3703578 - 3703458
Alignment:
| Q |
329 |
gttcctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagtccacatcaaacgtatagtaattgggtttctttgtct |
428 |
Q |
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| T |
3703578 |
gttcctcagaagttttgacaaatctctcaaacacaa----gaaactcaccagctctgacatagtccacatcaaacgtatagtaattgagtttctttgtct |
3703483 |
T |
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| Q |
429 |
ttagagcaactttaatgatcttttt |
453 |
Q |
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| T |
3703482 |
ttagagcaactttaatgatcttttt |
3703458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 3698631 - 3698574
Alignment:
| Q |
333 |
ctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagt |
392 |
Q |
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| T |
3698631 |
ctcaaaagttttgacaaatcactcaaacacaaaa--gaaactcaccagctctgacatagt |
3698574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 3706928 - 3706871
Alignment:
| Q |
99 |
gtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatgg |
156 |
Q |
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| T |
3706928 |
gtgtccatttcaatgatgtccatgttctgcaactgttggagaatgtgacgagcaatgg |
3706871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 15179378 - 15179567
Alignment:
| Q |
90 |
taccccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgac |
189 |
Q |
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| T |
15179378 |
taccccttggtatccatctcgatgaggttcatgttctccaactgttgaagaatgtgacgagcaatagcaccactgctcttgcagaaatggggaggacgac |
15179477 |
T |
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| Q |
190 |
tgccattcctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
279 |
Q |
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| T |
15179478 |
ttccattcctctgactcccaccgtaaatcctctggaatgaaccaacaccaagaccgcctcttacgtagattttccttgccatggaagctg |
15179567 |
T |
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