View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_16 (Length: 451)
Name: NF17092_low_16
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_16 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 451
Target Start/End: Original strand, 776664 - 777108
Alignment:
| Q |
3 |
agcacacaaaaacaacacggtgcatctggaattcctcaatgaattcaatataattagatcctgataacattgaaaatccgaacaatgcgactttcaagaa |
102 |
Q |
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| T |
776664 |
agcacacaaaaacaacacggtg----tggaattcctcaatgaattcaatataattagatcctgataacattgaaaatccgaacaatacaactttcaagaa |
776759 |
T |
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| Q |
103 |
tgccatattttctttattgtatgcacttaatttcacaactttgcaagaaccgatcaatttattgcattttcctgcaagtccttcaactggagtatacttg |
202 |
Q |
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| T |
776760 |
tgccatattttctttattgtatgcacttaatttcacaactttgcaagaaccgatcaatttattgcattttcctgcaagtccttcaactggagtatacttg |
776859 |
T |
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| Q |
203 |
tagatcttgaatcaaataagaacgtattttattgcatcttgaacatatgttatctacaatcaagnnnnnnncacaagttagtaactaaagtttatatcat |
302 |
Q |
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| T |
776860 |
tagatcttgaatcaaataagaacgtattttattgcatcttgaacatattttatctacaatcaagtttttttcacaagttagtaactaaagtttatatcat |
776959 |
T |
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| Q |
303 |
aagctaatattatgagatagaaggtaattaaaactagtcttacatgtacatgtgattcaagatgcacacgtctacatgcatacattatacacacatttgt |
402 |
Q |
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| T |
776960 |
aagctaatattatgagatagaagataattaaaattagtcttacatgtacatgtgattcaagatgcacacgtctacatgcatacattatatacacatttgt |
777059 |
T |
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| Q |
403 |
ttctctaaataagggtaaatagaaacagagaaggatgcaaaaataacat |
451 |
Q |
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| T |
777060 |
ttctctaaataagggtaaatagaaacagagaaggatgcaaaaataacat |
777108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 8032104 - 8032175
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcatacat--tatacacacatttgtttctctaaataagg |
416 |
Q |
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| T |
8032104 |
tgtacgtgtgatttaagatgcacaaatcaacatgcatacgccgtagacacacatttgtttctctaaataagg |
8032175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 6706 - 6635
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcataca--ttatacacacatttgtttctctaaataagg |
416 |
Q |
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| T |
6706 |
tgtacatgtgattcaagatgcacatgtcaacatgcatacactgtaaacacacatttgtttctctaaataagg |
6635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 26292324 - 26292253
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcataca--ttatacacacatttgtttctctaaataagg |
416 |
Q |
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| T |
26292324 |
tgtacatgtgattcaagatgcacatgtcaacatgcatacactgtaaacagacatttgtttctctaaataagg |
26292253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 26305581 - 26305510
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcataca--ttatacacacatttgtttctctaaataagg |
416 |
Q |
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| T |
26305581 |
tgtacatgtgattcaagatgcacatgtcaacatgcatacactgtaaacagacatttgtttctctaaataagg |
26305510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 26338936 - 26338865
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcataca--ttatacacacatttgtttctctaaataagg |
416 |
Q |
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| T |
26338936 |
tgtacatgtgattcaagatgcacatgtcaacatgcatacactgtaaacagacatttgtttctctaaataagg |
26338865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 38990424 - 38990351
Alignment:
| Q |
347 |
tgtacatgtgattcaagatgcacacgtctacatgcatacattatacac--acatttgtttctctaaataagggt |
418 |
Q |
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| T |
38990424 |
tgtacaagtgattcaagatgcacaagtcaacatgcatacattgtacacaaacatttgttgcactaaataagggt |
38990351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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