View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_17 (Length: 442)
Name: NF17092_low_17
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 7259888 - 7259474
Alignment:
| Q |
18 |
agaatggcgttatatataagaaattttgttgcaagttggagggtaagcatattccaatgcagcactaaatgacaaatgctataaaatatgggacattcca |
117 |
Q |
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| T |
7259888 |
agaatggcgttatatataagaaattttgttgcaagttggagggtaagcatattccaatgcagcactaaatgacaaatgctataaaatatgggacattcca |
7259789 |
T |
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| Q |
118 |
gctgacaaaggtcccctacccctcccttttctttcataattaataaatcatttgatcagtaaaaggaaaaacttgtttgttattgccattttgggtcttg |
217 |
Q |
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| T |
7259788 |
gctgacaaaggtcccctacccctcccttttctttcataattaataaatcatttgatcagtaaaaggaaaaacttgtttgctattgccattttgggtcttg |
7259689 |
T |
|
| Q |
218 |
aaactgaaaaggtcagtaggatagaaaatatatttaaggttggacaaagtgttaactaatcaatgttaactttgattaagattttcccctnnnnnnngct |
317 |
Q |
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| T |
7259688 |
aaactgaaaaggtcaataggatagaaaatatatttaaggttggacaaagtgttaaccaatcaatgttaactttgattaagattttcccctaaaaaaagct |
7259589 |
T |
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| Q |
318 |
agattaagattttaagttgaagtcataatttgttgaggagtttggagaaggaacactaggctaaagattaacactacactttcatcaaaaaaccctcaag |
417 |
Q |
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| T |
7259588 |
agattaagattttaagttgaagtcataatttgttgaggagtttggagaaggaacactaggctaaagattaacactacacttttatc-aaaaactctcaag |
7259490 |
T |
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| Q |
418 |
acagttagagtattat |
433 |
Q |
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| T |
7259489 |
gcagttagagtattat |
7259474 |
T |
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