View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_18 (Length: 440)

Name: NF17092_low_18
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_18
NF17092_low_18
[»] chr7 (21 HSPs)
chr7 (241-329)||(37925935-37926023)
chr7 (245-329)||(39646567-39646651)
chr7 (245-329)||(28074165-28074249)
chr7 (245-329)||(33519146-33519230)
chr7 (245-329)||(35422062-35422146)
chr7 (245-329)||(48881620-48881704)
chr7 (245-328)||(21857445-21857528)
chr7 (245-319)||(16833793-16833867)
chr7 (247-329)||(36267615-36267697)
chr7 (245-329)||(48015305-48015389)
chr7 (245-329)||(37620872-37620956)
chr7 (245-317)||(48013600-48013673)
chr7 (245-321)||(3143578-3143658)
chr7 (245-299)||(12670928-12670982)
chr7 (251-329)||(2087801-2087883)
chr7 (248-317)||(3215934-3216003)
chr7 (250-329)||(31364107-31364183)
chr7 (278-321)||(8122279-8122322)
chr7 (256-329)||(30592315-30592388)
chr7 (346-378)||(17852884-17852916)
chr7 (349-385)||(42306542-42306578)
[»] chr4 (23 HSPs)
chr4 (241-329)||(29993833-29993921)
chr4 (248-329)||(22186820-22186901)
chr4 (246-329)||(55080678-55080761)
chr4 (245-322)||(47846124-47846201)
chr4 (245-329)||(7977558-7977642)
chr4 (245-329)||(37761562-37761646)
chr4 (245-329)||(43961508-43961592)
chr4 (248-329)||(54001168-54001246)
chr4 (245-327)||(9030314-9030396)
chr4 (245-327)||(54576391-54576473)
chr4 (250-329)||(11089619-11089698)
chr4 (248-329)||(4437487-4437568)
chr4 (245-329)||(14539370-14539454)
chr4 (253-329)||(51329901-51329977)
chr4 (245-329)||(34995149-34995231)
chr4 (264-328)||(5825013-5825077)
chr4 (245-317)||(17182557-17182631)
chr4 (245-305)||(56135847-56135904)
chr4 (122-223)||(40638637-40638737)
chr4 (265-318)||(51075215-51075268)
chr4 (286-329)||(35543369-35543412)
chr4 (245-329)||(21694952-21695035)
chr4 (257-329)||(55510280-55510351)
[»] chr8 (17 HSPs)
chr8 (245-329)||(16024252-16024336)
chr8 (245-329)||(12022205-12022289)
chr8 (245-329)||(40633051-40633135)
chr8 (248-329)||(8815203-8815284)
chr8 (245-329)||(43732785-43732869)
chr8 (248-329)||(20472754-20472835)
chr8 (245-329)||(30365228-30365312)
chr8 (245-319)||(6453282-6453356)
chr8 (247-329)||(34196409-34196491)
chr8 (245-329)||(9434360-9434445)
chr8 (246-315)||(43826431-43826500)
chr8 (245-317)||(39449402-39449474)
chr8 (259-329)||(29937614-29937684)
chr8 (245-329)||(8671854-8671940)
chr8 (245-322)||(9933339-9933416)
chr8 (245-299)||(24243139-24243193)
chr8 (349-378)||(31543284-31543313)
[»] chr5 (13 HSPs)
chr5 (241-306)||(5688507-5688572)
chr5 (245-329)||(34980908-34980992)
chr5 (245-329)||(40305727-40305811)
chr5 (245-329)||(10043350-10043434)
chr5 (245-329)||(21581045-21581129)
chr5 (245-329)||(33744255-33744339)
chr5 (245-326)||(6382425-6382506)
chr5 (245-326)||(10204674-10204755)
chr5 (245-321)||(8551488-8551564)
chr5 (245-320)||(10043080-10043155)
chr5 (261-329)||(6597852-6597920)
chr5 (245-329)||(12035998-12036081)
chr5 (245-326)||(15986689-15986770)
[»] chr3 (21 HSPs)
chr3 (245-329)||(42772130-42772214)
chr3 (245-329)||(26135895-26135979)
chr3 (245-329)||(34641090-34641172)
chr3 (245-329)||(24253820-24253904)
chr3 (249-329)||(40858667-40858747)
chr3 (245-329)||(42699674-42699758)
chr3 (245-329)||(17474268-17474352)
chr3 (245-328)||(8432322-8432405)
chr3 (247-329)||(36727276-36727358)
chr3 (252-322)||(41414183-41414253)
chr3 (245-318)||(10943687-10943760)
chr3 (245-329)||(48683710-48683795)
chr3 (245-329)||(21090133-21090217)
chr3 (245-329)||(44412459-44412543)
chr3 (245-329)||(18086042-18086127)
chr3 (245-306)||(27197734-27197795)
chr3 (245-314)||(46978525-46978594)
chr3 (260-329)||(55428492-55428561)
chr3 (245-316)||(16884047-16884117)
chr3 (278-329)||(54985755-54985806)
chr3 (342-378)||(34641005-34641041)
[»] chr2 (22 HSPs)
chr2 (245-329)||(15085762-15085846)
chr2 (245-318)||(2381060-2381133)
chr2 (245-321)||(35325367-35325443)
chr2 (245-329)||(45257405-45257489)
chr2 (245-329)||(34187673-34187759)
chr2 (245-329)||(45098267-45098351)
chr2 (245-318)||(1052828-1052901)
chr2 (245-314)||(31928121-31928190)
chr2 (248-329)||(36052149-36052230)
chr2 (249-329)||(8554361-8554441)
chr2 (245-325)||(21502131-21502211)
chr2 (245-329)||(31061457-31061541)
chr2 (250-329)||(3094415-3094494)
chr2 (279-325)||(16713657-16713703)
chr2 (241-282)||(22356059-22356100)
chr2 (245-314)||(33265704-33265773)
chr2 (245-329)||(42296365-42296449)
chr2 (253-329)||(42813726-42813802)
chr2 (245-329)||(9313081-9313169)
chr2 (126-210)||(1010117-1010201)
chr2 (277-329)||(22356133-22356186)
chr2 (346-378)||(12541773-12541805)
[»] chr6 (13 HSPs)
chr6 (247-328)||(15353463-15353544)
chr6 (245-324)||(4097302-4097381)
chr6 (245-328)||(15323323-15323406)
chr6 (251-329)||(31799025-31799103)
chr6 (245-329)||(9051596-9051680)
chr6 (245-329)||(25468461-25468545)
chr6 (245-329)||(3841183-3841268)
chr6 (245-317)||(26318403-26318475)
chr6 (251-322)||(15373668-15373739)
chr6 (253-329)||(10293354-10293430)
chr6 (251-329)||(34176633-34176711)
chr6 (349-378)||(30487517-30487546)
chr6 (346-378)||(1300632-1300664)
[»] chr1 (17 HSPs)
chr1 (245-329)||(1085552-1085636)
chr1 (245-329)||(33643366-33643450)
chr1 (246-329)||(47071150-47071233)
chr1 (245-329)||(25268362-25268446)
chr1 (245-329)||(40709354-40709438)
chr1 (259-329)||(35512909-35512979)
chr1 (245-329)||(2506637-2506721)
chr1 (245-317)||(35927911-35927982)
chr1 (245-314)||(51303461-51303530)
chr1 (245-329)||(525163-525245)
chr1 (245-328)||(13386982-13387065)
chr1 (245-328)||(20607317-20607397)
chr1 (245-322)||(40287324-40287401)
chr1 (245-329)||(1344646-1344730)
chr1 (245-304)||(17622635-17622694)
chr1 (346-378)||(51303387-51303419)
chr1 (253-329)||(52707751-52707827)
[»] scaffold0007 (1 HSPs)
scaffold0007 (248-329)||(242317-242398)
[»] scaffold0095 (1 HSPs)
scaffold0095 (245-317)||(8245-8317)
[»] scaffold0026 (1 HSPs)
scaffold0026 (245-323)||(1465-1543)
[»] scaffold0012 (2 HSPs)
scaffold0012 (245-329)||(184704-184789)
scaffold0012 (346-378)||(184614-184646)
[»] scaffold0071 (1 HSPs)
scaffold0071 (245-329)||(52983-53067)
[»] scaffold0240 (1 HSPs)
scaffold0240 (247-318)||(17640-17711)
[»] scaffold1414 (1 HSPs)
scaffold1414 (245-318)||(399-473)
[»] scaffold0119 (1 HSPs)
scaffold0119 (248-329)||(37484-37565)
[»] scaffold0006 (1 HSPs)
scaffold0006 (256-304)||(81498-81546)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 37925935 - 37926023
Alignment:
Q  241 atagattaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||    
T  37925935 atagattaagtgtttttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaacatcattttataatgtccgtaattt 37926023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 39646567 - 39646651
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  39646567 attaactgtttttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaattt 39646651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 28074249 - 28074165
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  28074249 attaagtgtttttgaagtattatatgatcatttatcaggttgttaattcaattttctaaaaatcattttataatgtccgtaattt 28074165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 33519146 - 33519230
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  33519146 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaattt 33519230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 35422062 - 35422146
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| |||| || ||  || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35422062 attaagtgtttttgaagtatcatatgattatttattatgttgttaattcaattttctaaaaattattttataatgtccgtaattt 35422146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 48881704 - 48881620
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||| ||||||||| ||||||| |||||  |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  48881704 attaagtatttttgaagcattatataatcatttatcatgttgttaattcaattttctgaaaattattttataatgtccgtaattt 48881620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 21857445 - 21857528
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    |||||||||||||||| |||| ||| |||||  |||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  21857445 attaagtgtttttgaaatattgtatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaatt 21857528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 16833793 - 16833867
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatg 319  Q
    |||||||||||||||||||||| || |||||  |||||||||||||||||||||| |||||||||| ||||||||    
T  16833793 attaagtgtttttgaagtattacatgatcatttatcatgttattaattcaattttataaaaattatattataatg 16833867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 36267697 - 36267615
Alignment:
Q  247 taagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||| |||||  ||||| || || |||||||||||||||||| |||||||||| ||||||||||    
T  36267697 taagtgtttttgaagtattatatgatcatttatcatattgttgattcaattttctaaaaatcattttataatatccgtaattt 36267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 48015305 - 48015389
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||  ||||||| |||||  |||||||| |||||||||||||| |||||||||||||||| ||| |||||||    
T  48015305 attaagtgtttttgaaaaattatatgatcatttatcatgttgttaattcaattttccaaaaattattttataaagtctgtaattt 48015389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 37620872 - 37620956
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||| ||||||||||||||||||| ||| |  ||||||||  ||||||||||||| |||||| |||||||||||||| ||||||    
T  37620872 attaaatgtttttgaagtattatataatcttttatcatgttgataattcaattttccaaaaatcattttataatgtccataattt 37620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 48013600 - 48013673
Alignment:
Q  245 attaagtgtttttgaagtatt-atatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    ||||||||||||||||  ||| |||| |||||  |||||||| |||||||||||||||||||||||||||||||    
T  48013600 attaagtgtttttgaaaaattcatatgatcatttatcatgttgttaattcaattttctaaaaattattttataa 48013673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 3143578 - 3143658
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgtt----attaattcaattttctaaaaattattttataatgtc 321  Q
    ||||||| ||||||||||||||||| |||||  ||||| ||    |||||||||||||| |||||||||||||||||||||    
T  3143578 attaagtttttttgaagtattatatgatcatttatcattttgttaattaattcaattttttaaaaattattttataatgtc 3143658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 12670982 - 12670928
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaatttt 299  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||||||||||||    
T  12670982 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaatttt 12670928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 2087883 - 2087801
Alignment:
Q  251 tgtttttgaagtattatatcatca----tcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||| ||||    |  |||||||| |||||||| |||| |||||||||||||||||| ||||||||||    
T  2087883 tgtttttgaagtattatatgatcaattatttatcatgttgttaattcatttttttaaaaattattttataatatccgtaattt 2087801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 3216003 - 3215934
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    |||| ||| ||||||||||||| |||||  ||||| || ||||||||||||||||||||| |||||||||    
T  3216003 aagtatttatgaagtattatatgatcatttatcatattgttaattcaattttctaaaaatcattttataa 3215934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 31364183 - 31364107
Alignment:
Q  250 gtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| |||||   | ||||  || |||||||||||| ||||| |||||||||||||||||||||    
T  31364183 gtgtttttgaagtattatatgatcat---ttatgtcgttgattcaattttcttaaaatcattttataatgtccgtaattt 31364107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 8122279 - 8122322
Alignment:
Q  278 atcatgttattaattcaattttctaaaaattattttataatgtc 321  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  8122279 atcatcttgttaattcaattttctaaaaattattttataatgtc 8122322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 30592388 - 30592315
Alignment:
Q  256 ttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||| || ||  ||||| | |||| ||||||||| ||||||| |||||||| |||| |||||||    
T  30592388 ttgaagtattatatgattatttatcatatgattatttcaattttttaaaaatcattttatagtgtctgtaattt 30592315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 17852916 - 17852884
Alignment:
Q  346 ccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||| ||||||||    
T  17852916 ccctcccctcctaaaccctcaatctaaacacac 17852884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 42306542 - 42306578
Alignment:
Q  349 tcccctcctaaaccctcaatcgaaacacacattaaag 385  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  42306542 tcccctcctaaaccctcaatccaaacacactttaaag 42306578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 29993921 - 29993833
Alignment:
Q  241 atagattaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  29993921 atagattaagtatttttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaaaatcattttatagtgtccgtaattt 29993833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 22186820 - 22186901
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  22186820 aagtgtttttgaagtattatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaattt 22186901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 55080678 - 55080761
Alignment:
Q  246 ttaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| ||| |||||  |||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  55080678 ttaagtgtttttgaagtattttatgatcatttatcatgttgttaattaaattttctaaaaattattttataatgttcgtaattt 55080761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 47846201 - 47846124
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtcc 322  Q
    ||||||||||||||||||||||||| || ||  |||||||| ||||||||||||| ||||||||||||||||||||||    
T  47846201 attaagtgtttttgaagtattatatgattatttatcatgttcttaattcaattttgtaaaaattattttataatgtcc 47846124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 7977642 - 7977558
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||| ||||||||||||||||||| |||||  |||||||| |||||||||||||| ||| ||||||||||||||| ||||||||    
T  7977642 attaattgtttttgaagtattatatgatcatttatcatgttgttaattcaattttcaaaatattattttataatgttcgtaattt 7977558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 37761562 - 37761646
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||| |||||| |||||  |||||||| ||||||||||||||||||||| |||| ||||||||| ||||||    
T  37761562 attaagtgtttttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtccataattt 37761646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 43961508 - 43961592
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||||||  |||||||||||||||||||| |||||||||||| | ||||||    
T  43961508 attaagtgtttttgaagtattatatgatcatttatcatgttgataattcaattttctaaaaatcattttataatgttcataattt 43961592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 54001246 - 54001168
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||| |||||  |||||||||   |||||||||| |||||||||||||||||||||||||||||    
T  54001246 aagtgtttttgaagtattatatgatcatttatcatgtta---attcaattttttaaaaattattttataatgtccgtaattt 54001168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 9030314 - 9030396
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaat 327  Q
    ||||||||||||| ||||||||||| |||||  ||||| ||||||||| |||||||||||||| ||||||||||||| |||||    
T  9030314 attaagtgtttttaaagtattatataatcatttatcattttattaattaaattttctaaaaatcattttataatgtctgtaat 9030396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 54576473 - 54576391
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaat 327  Q
    ||||| ||||||||||||||||||| |||||  |||| ||| |||||||||||||||| |||| |||||||||||||||||||    
T  54576473 attaaatgtttttgaagtattatataatcatttatcacgttgttaattcaattttctataaatcattttataatgtccgtaat 54576391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 11089619 - 11089698
Alignment:
Q  250 gtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||| ||||| |||||  || ||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  11089619 gtgtttttgaagtaatatatgatcatttatgatgttgttaattcaattttctaaaaaatattttataaagtccgtaattt 11089698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 4437568 - 4437487
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||| ||||   |||||||| ||||||||||||| ||||||| |||||||||| ||| ||||||    
T  4437568 aagtgtttttgaagtattatatgatcaattatcatgttgttaattcaattttttaaaaatcattttataatatccataattt 4437487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 14539370 - 14539454
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  || ||||| |||||| |||||||||| ||  |||||||||||| ||||||||    
T  14539370 attaagtgtttttgaagtattatatgatcatttattatgttcttaatttaattttctaacaaacattttataatgttcgtaattt 14539454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 51329901 - 51329977
Alignment:
Q  253 tttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||| |||||  ||||| || |||||||||||||||| ||||||||||||||| ||| ||||||    
T  51329901 tttttgaagtattatataatcatttatcattttgttaattcaattttctataaattattttataatatccctaattt 51329977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 34995149 - 34995231
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||  || ||  ||||||||  |||||||||||||||||||| |||| ||||| ||||||||||    
T  34995149 attaagtgtttttgaagtattataagattatttatcatgtt--taattcaattttctaaaaatcatttgataatatccgtaattt 34995231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 5825013 - 5825077
Alignment:
Q  264 ttatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    |||||| |||||  |||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  5825013 ttatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaatt 5825077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 17182631 - 17182557
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaatttt--ctaaaaattattttataa 317  Q
    ||||||||||||||||||||||||| |||||  ||||| || |||||||||||||  | |||||| |||||||||    
T  17182631 attaagtgtttttgaagtattatatgatcatttatcatattgttaattcaatttttgcaaaaaatcattttataa 17182557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 56135847 - 56135904
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaa 305  Q
    ||||||||||||||||||||||||| |||||  ||||||   |||||||||||||||||||    
T  56135847 attaagtgtttttgaagtattatatgatcatttatcatg---ttaattcaattttctaaaa 56135904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 40638637 - 40638737
Alignment:
Q  122 tgtcttttgatagcatataatgttttgactgcctcactgaatacaactaagattcaaatgatctttttggagatttggttgtgttgtcagtaggatacta 221  Q
    ||||||||||||||||| ||||| |||| || |||||| || || | |  |||  ||||||||| ||||||||||||||| |||||||| |||| |||||    
T  40638637 tgtcttttgatagcatagaatgtgttgattgtctcactaaaaacgagttggatctaaatgatctgtttggagatttggttttgttgtca-taggttacta 40638735  T
Q  222 gg 223  Q
    ||    
T  40638736 gg 40638737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 51075215 - 51075268
Alignment:
Q  265 tatatcatcatcaatcatgttattaattcaattttctaaaaattattttataat 318  Q
    ||||| |||||  |||||||| ||||||||||||| ||||||||||||||||||    
T  51075215 tatatgatcatttatcatgttgttaattcaattttttaaaaattattttataat 51075268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 35543412 - 35543369
Alignment:
Q  286 attaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||| |||||||||||||||||||| | ||||||    
T  35543412 attaattcaattttttaaaaattattttataatgttcctaattt 35543369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 21695035 - 21694952
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||  |||||||||||||| ||||| | |||| || ||| ||||||||  ||||||  |||||||| ||||||||||||    
T  21695035 attaagtgtgattgaagtattatatgatcatta-tcattttgttatttcaatttattaaaaaccattttatagtgtccgtaattt 21694952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 55510280 - 55510351
Alignment:
Q  257 tgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||| |||||  |||||||| ||| ||||||||| | |||| ||||||||| ||| ||||||||    
T  55510280 tgaagtattatatgatcattcatcatgttgttatttcaatttttttaaaa-tattttatagtgttcgtaattt 55510351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 16024252 - 16024336
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  16024252 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaattt 16024336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 12022289 - 12022205
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  12022289 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaattt 12022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 40633135 - 40633051
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||| |||||||  |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40633135 attaagtgtttttgaaatattatacaatcatttatcatgttgttaattcaattttctaaaaattattttataatgtccgtaattt 40633051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 8815284 - 8815203
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||| |||||  |||||||| || |||||||||||||||||| |||||||||||||||||||||    
T  8815284 aagtgtttttgaagtattatataatcatttatcatgttgttgattcaattttctaaaaatcattttataatgtccgtaattt 8815203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 43732785 - 43732869
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||| || |||||||||||||| |||||| |||||||||||||||||||||    
T  43732785 attaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatgtccgtaattt 43732869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 20472835 - 20472754
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||| |||||  ||||| || ||||||||||||||||||| ||||||||||||||| |||||||    
T  20472835 aagtgtttttgaagtattatatgatcatatatcatattgttaattcaattttctaaaatttattttataatgtctgtaattt 20472754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 30365228 - 30365312
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||| |||||| |||||  |||||||| ||||||||||||||||||||| |||| |||||||| |||||||    
T  30365228 attaagtgtttttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtctgtaattt 30365312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 6453282 - 6453356
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatg 319  Q
    ||||||||||||||||||||||||| || |   |||||||||||||||||||||||||||||| |||||||||||    
T  6453282 attaagtgtttttgaagtattatatgattacttatcatgttattaattcaattttctaaaaatcattttataatg 6453356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 34196409 - 34196491
Alignment:
Q  247 taagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||| ||| |  ||| |||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  34196409 taagtgtttttgaagtattatatgatcgtttatcttgttgttaattcaattttctaaaaatcattttataatgtctgtaattt 34196491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 9434445 - 9434360
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaatta-ttttataatgtccgtaattt 329  Q
    |||||||| |||||||||||||||| |||||  |||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||    
T  9434445 attaagtggttttgaagtattatattatcatttatcatgttgttaattcaattttttaaaaattatttttataatatccgtaattt 9434360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 43826431 - 43826500
Alignment:
Q  246 ttaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttat 315  Q
    |||||||||||||||||||| ||| |||||  |||||||| |||||||||||||||||||||||||||||    
T  43826431 ttaagtgtttttgaagtattttatgatcatttatcatgttgttaattcaattttctaaaaattattttat 43826500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 39449402 - 39449474
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||||    
T  39449402 attaactgtttttgaagtattatatgatcattaatcatgttgttaattcaattttttaaaaataattttataa 39449474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 29937614 - 29937684
Alignment:
Q  259 aagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||| |||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  29937614 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattt 29937684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 8671940 - 8671854
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaat--catgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||| ||||||||||||||||| |||||   |  ||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  8671940 attaagtatttttgaagtattatatgatcatttttttcatattgttaattcaattttctaaaaatcattttataatgtccgtaattt 8671854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 9933339 - 9933416
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtcc 322  Q
    ||||||| |||||||| |||||||| |||||  |||||||| ||||||||||||| | ||||| ||||||||||||||    
T  9933339 attaagtatttttgaaatattatatgatcatttatcatgttgttaattcaatttttttaaaatcattttataatgtcc 9933416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 24243193 - 24243139
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaatttt 299  Q
    |||||||||  |||||||||||||| |||||  |||||||||||| |||||||||    
T  24243193 attaagtgtgattgaagtattatatgatcatttatcatgttattatttcaatttt 24243139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 31543284 - 31543313
Alignment:
Q  349 tcccctcctaaaccctcaatcgaaacacac 378  Q
    ||||||||||||||||||||||||||||||    
T  31543284 tcccctcctaaaccctcaatcgaaacacac 31543313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 5688507 - 5688572
Alignment:
Q  241 atagattaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5688507 atagattaagtgtttttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaaaa 5688572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 34980908 - 34980992
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||| ||||||||||| |||| |||||||||||||| ||||||    
T  34980908 attaagtgtttttgaagtattatataatcatttatcatgttgttaactcaattttctataaatcattttataatgtccataattt 34980992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 40305811 - 40305727
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||| |||||||||||| ||||| |||||  ||||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  40305811 attaagggtttttgaagtactatatgatcatttatcatattgttaattcaattttctaaaaattattttataatgtctgtaattt 40305727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 10043350 - 10043434
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| || ||  || ||||| ||||||||||||||||||||| |||||||||| | ||||||||    
T  10043350 attaagtgtttttgaagtattatatgattatttataatgttgttaattcaattttctaaaaatcattttataatattcgtaattt 10043434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 21581045 - 21581129
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| |||| | |||  |||||||| |||||||||||||||||||||||||| |||| |||| ||||||    
T  21581045 attaagtgtttttgaagtatcatatgaacatttatcatgttgttaattcaattttctaaaaattatttcataacgtccataattt 21581129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 33744339 - 33744255
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||| | ||||| |||||  |||||||| |||||||||||||| |||||| |||||||||||||| ||||||    
T  33744339 attaagtgtttttgaagaaatatatgatcatttatcatgttgttaattcaattttcaaaaaatcattttataatgtccataattt 33744255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 6382425 - 6382506
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaa 326  Q
    ||||||| |||||||||||| | || | |||  |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  6382425 attaagtctttttgaagtatcacatgaacatttatcatgttgttaattcaattttctaaaaagtattttataatgtccgtaa 6382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 10204674 - 10204755
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaa 326  Q
    ||||||||||||||||||||||||| |||||  || | ||| ||||||||||||| ||||||| ||||| ||||||| ||||    
T  10204674 attaagtgtttttgaagtattatatgatcatttattacgttgttaattcaattttttaaaaatcattttttaatgtctgtaa 10204755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 8551564 - 8551488
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtc 321  Q
    ||||||||||||| ||||||||||| |||||  || ||||| |||||| |||||| ||||||| |||||||||||||    
T  8551564 attaagtgtttttaaagtattatatgatcatttataatgttgttaatttaattttttaaaaatcattttataatgtc 8551488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 10043155 - 10043080
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgt 320  Q
    ||||||||||||| ||||||||||| |||||  |||||||| |||||||||||||||| |||| ||| | ||||||    
T  10043155 attaagtgtttttaaagtattatatgatcatttatcatgttgttaattcaattttctagaaataattctttaatgt 10043080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 6597920 - 6597852
Alignment:
Q  261 gtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||| |||||  |||||||| ||| |||||||||| |||||| |||||| ||||||||||||||    
T  6597920 gtattatatgatcatttatcatgttgttatttcaattttcaaaaaatcattttacaatgtccgtaattt 6597852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 12036081 - 12035998
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||| ||||||||||| || ||  |||||||| | ||||||||||||||| ||| |||||||||||| | ||||||    
T  12036081 attaagtgttttttaagtattatatgataatttatcatgttgt-aattcaattttctaataataattttataatgttcataattt 12035998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 15986770 - 15986689
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaa 326  Q
    ||||||||||||| ||||||||||| |||||     ||||| ||||||||||||| ||||| | ||||||||||||| ||||    
T  15986770 attaagtgtttttaaagtattatatgatcattttaaatgttgttaattcaattttttaaaagtcattttataatgtctgtaa 15986689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 42772130 - 42772214
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  42772130 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttcaaaaaatcattttataatgtccgtaattt 42772214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 26135895 - 26135979
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| || ||  ||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  26135895 attaagtgtttttgaagtattatataattatttatcatattgttaattcaattttcaaaaaattattttataatgtccgtaattt 26135979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 34641090 - 34641172
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||  |||| |||||||||||||||||||||    
T  34641090 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttct--aaatcattttataatgtccgtaattt 34641172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 24253820 - 24253904
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||| |||||| |||||  |||||||| ||||||||| ||||||||| | |||||||||||||||||||||    
T  24253820 attaagtgtttttgaagtgttatataatcatttatcatgttgttaattcaactttctaaaactcattttataatgtccgtaattt 24253904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 40858667 - 40858747
Alignment:
Q  249 agtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||| |||||  |||||||| |||||||||||||| ||| || |||||||||||||||||||||    
T  40858667 agtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttcaaaagatcattttataatgtccgtaattt 40858747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 42699758 - 42699674
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||| ||  |||||||||||||||||| |||||||||||||||| ||||||    
T  42699758 attaagtgtttttgaagtattatatgatcatttatcatattgataattcaattttctaaaatttattttataatgtccataattt 42699674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 17474352 - 17474268
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||| | || ||  ||||| || |||||||||||||  ||||||||||||||||||||||||||||    
T  17474352 attaagtgtttttgaagtattatttgattatttatcatattgttaattcaatttttaaaaaattattttataatgtccgtaattt 17474268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 8432405 - 8432322
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    ||||||||||||||||||||||||  || ||  |||||||| ||||||||||||| ||||||| ||||||||||||| ||||||    
T  8432405 attaagtgtttttgaagtattataaaattatttatcatgttgttaattcaattttgtaaaaatcattttataatgtctgtaatt 8432322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 36727276 - 36727358
Alignment:
Q  247 taagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||| || ||  |||||||| |||| | |||||||| |||||||||||||||||| ||||||||    
T  36727276 taagtgtttttgaagtattatatgataatttatcatgttgttaagttaattttcttaaaattattttataatgttcgtaattt 36727358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 41414183 - 41414253
Alignment:
Q  252 gtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtcc 322  Q
    |||||||||||||||||| |||||  |||||||| |||| |||||||||||||||| ||||||||||||||    
T  41414183 gtttttgaagtattatatgatcatttatcatgttgttaactcaattttctaaaaatcattttataatgtcc 41414253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 10943760 - 10943687
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataat 318  Q
    ||||||||||||||||||||||||| || ||  || ||||| ||||||||||||||||||||| ||||||||||    
T  10943760 attaagtgtttttgaagtattatataattatttattatgttgttaattcaattttctaaaaatcattttataat 10943687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 48683710 - 48683795
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatca-tgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||| |||||||| |||||  |||| |||| |||||||||||| |||||||| |||||||||||| ||||||||    
T  48683710 attaagtgtttttgaaatattatatgatcatttatcaatgttgttaattcaatttcctaaaaatcattttataatgttcgtaattt 48683795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 21090217 - 21090133
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| || ||  |||||||| |||||||||||||| ||||||  ||||||||| || |||||||    
T  21090217 attaagtgtttttgaagtattatatgataatatatcatgttgttaattcaattttcaaaaaatcgttttataatatctgtaattt 21090133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 44412459 - 44412543
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| || ||  |||||||| |||||||||||||| |||||| |||||| | ||| ||||||||    
T  44412459 attaagtgtttttgaagtattatatgatgatttatcatgttgttaattcaattttcaaaaaatcattttacattgttcgtaattt 44412543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 18086127 - 18086042
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatca-atcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||| ||| |||||   || ||||| ||||||||||||||||||||  ||||||||||||| |||||||    
T  18086127 attaagtgtttttgaagtattttatgatcattttattatgttgttaattcaattttctaaaaaacattttataatgtctgtaattt 18086042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 27197795 - 27197734
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaa 306  Q
    ||||||| | ||| ||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  27197795 attaagtatatttaaagtattatatgatcatctatcatgttgttaattcaattttctaaaaa 27197734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 46978525 - 46978594
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattatttta 314  Q
    ||||| ||||||||||||||||||| |||||  |||||||| |||||| |||||| ||||||| ||||||    
T  46978525 attaaatgtttttgaagtattatataatcatttatcatgttgttaattaaattttataaaaatcatttta 46978594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 55428492 - 55428561
Alignment:
Q  260 agtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||| |||||  |||| ||| ||||||||||||||||||||| || || |||||||||||||||    
T  55428492 agtattatatgatcatttatcacgttgttaattcaattttctaaaaatcatcttgtaatgtccgtaattt 55428561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 16884117 - 16884047
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttata 316  Q
    ||||||||||||||||||||||||| |||||  |||||||| || |||||||||| ||||| || |||||||    
T  16884117 attaagtgtttttgaagtattatatgatcatttatcatgttgtt-attcaattttttaaaattttttttata 16884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 54985806 - 54985755
Alignment:
Q  278 atcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||| || ||||||||||||||||||||| | |||||||||||||||||||    
T  54985806 atcatattgttaattcaattttctaaaaatcaatttataatgtccgtaattt 54985755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 34641041 - 34641005
Alignment:
Q  342 tgagccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34641041 tgagccctcccctcctaaaccctcaatccaaacacac 34641005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 15085846 - 15085762
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  15085846 attaagtgtttttgaagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattttataatgtccgtaattt 15085762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 2381133 - 2381060
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataat 318  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||    
T  2381133 attaagtgtttttgaagtattatatcatcatcaatcatgttgtcaattcaattttctaaaattcattttataat 2381060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 35325367 - 35325443
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtc 321  Q
    ||||||| ||||||||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  35325367 attaagtatttttgaagtattatatgatcatttatcatgttattaattcaattttttaaaaattattttataatgtc 35325443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 45257405 - 45257489
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||| || |||||||||||||| |||||| |||||||||| ||||||||||    
T  45257405 attaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatatccgtaattt 45257489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 34187673 - 34187759
Alignment:
Q  245 attaagtgtttttgaagtattatatc--atcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||||||   |||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  34187673 attaagtgtttttgaagtattatatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattt 34187759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 45098267 - 45098351
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||||||||||||  |||||  ||||||||||||| |||||||    
T  45098267 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaatttttcaaaaaccattttataatgtctgtaattt 45098351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 1052901 - 1052828
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataat 318  Q
    ||||| |||||||||| |||||||  |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  1052901 attaaatgtttttgaaatattatacgatcatttatcatgttgttaattcaattttctaaaaattattttataat 1052828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 31928190 - 31928121
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattatttta 314  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||||||||  |||||| ||||||    
T  31928190 attaagtgtttttgaagtattatatgatcatttatcatgttattaattcaattttaaaaaaatcatttta 31928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 36052230 - 36052149
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||| |||| |||||  || ||||| ||||||||||||||||||||| ||||||||||||  |||||||    
T  36052230 aagtgtttttgaagtatcatatgatcatgtatgatgttgttaattcaattttctaaaaatcattttataatgtatgtaattt 36052149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 8554441 - 8554361
Alignment:
Q  249 agtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||| ||  |||||  |||||| | |||||||||||||  ||||||||||||||||||||||||||||    
T  8554441 agtgtttttgaagtattgtacgatcatttatcatgatgttaattcaatttttaaaaaattattttataatgtccgtaattt 8554361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 21502131 - 21502211
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgta 325  Q
    ||||||||||||||||||||||||| | |||  ||| |||| ||||| ||||||||| |||||||||||||||| ||||||    
T  21502131 attaagtgtttttgaagtattatatgaccatttatcttgttgttaatgcaattttcttaaaattattttataatatccgta 21502211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 31061457 - 31061541
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||| |||||||| |||||  |||||||| |||||||||||||| |||| | | ||||||||||| |||||||    
T  31061457 attaagtgtttttgaaatattatatgatcatttatcatgttgttaattcaattttcaaaaagtcactttataatgtctgtaattt 31061541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 3094494 - 3094415
Alignment:
Q  250 gtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| || ||  |||||||| ||||||||||||||||| ||| ||||||||| || ||||||||    
T  3094494 gtgtttttgaagtattatatgattatttatcatgttgttaattcaattttctaagaatcattttataacgttcgtaattt 3094415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 16713657 - 16713703
Alignment:
Q  279 tcatgttattaattcaattttctaaaaattattttataatgtccgta 325  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  16713657 tcatgttattaattcaattttctaaaaattattttataatatccgta 16713703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 22356059 - 22356100
Alignment:
Q  241 atagattaagtgtttttgaagtattatatcatcatcaatcat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22356059 atagattaagtgtttttgaagtattatatcatcatcaatcat 22356100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 33265704 - 33265773
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattatttta 314  Q
    ||||||||||||||||||||||||| |||||  ||||| || |||||||||||||| |||||| ||||||    
T  33265704 attaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcatttta 33265773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 42296449 - 42296365
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||| || |||||||| |||||  || ||||| |||||||| |||||||||| | |||||||||| ||||||||||    
T  42296449 attaagtgtttttaaattattatatgatcatttattatgttgttaattcatttttctaaaattcattttataatatccgtaattt 42296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 42813726 - 42813802
Alignment:
Q  253 tttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||| ||||||||||| || ||  |||| ||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  42813726 tttttaaagtattatatgattatttatcaggttgttaattcaattttctaaaaatcattttataatgttcgtaattt 42813802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 9313081 - 9313169
Alignment:
Q  245 attaagtgtttttgaagtattatatcatc-atca---atcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||| |||| ||| ||||   |||| ||| |||||||||||||| |||||| ||||||||||||| |||||||    
T  9313081 attaagtgtttttgaagtataatatgatcgatcatttatcaagttgttaattcaattttcgaaaaatcattttataatgtctgtaattt 9313169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 1010201 - 1010117
Alignment:
Q  126 ttttgatagcatataatgttttgactgcctcactgaatacaactaagattcaaatgatctttttggagatttggttgtgttgtca 210  Q
    ||||||| |||||||||||||||| || ||||||||| || ||| ||||  ||||||||| |||  |||||||||| ||||||||    
T  1010201 ttttgattgcatataatgttttgattgtctcactgaaaacgacttagatctaaatgatctgtttatagatttggttttgttgtca 1010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 22356133 - 22356186
Alignment:
Q  277 aatcatgttattaattcaattttctaaaaattattttat-aatgtccgtaattt 329  Q
    |||||| || ||||||||||||||||||||| ||||||| ||||||||||||||    
T  22356133 aatcattttgttaattcaattttctaaaaatcattttataaatgtccgtaattt 22356186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 12541805 - 12541773
Alignment:
Q  346 ccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||| ||||||||    
T  12541805 ccctcccctcctaaaccctcaatccaaacacac 12541773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 15353463 - 15353544
Alignment:
Q  247 taagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    ||||||||||||| ||||||||| |||||  || ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  15353463 taagtgtttttgatgtattatatgatcatttataatgttgttaattcaattttctaaaaatcattttataatgtccgtaatt 15353544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 4097381 - 4097302
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgt 324  Q
    |||||||||||| |||||||| ||| |||||  |||||||| |||||||||||||||||||| |||||||||||||||||    
T  4097381 attaagtgttttggaagtattgtatgatcatttatcatgttgttaattcaattttctaaaaaatattttataatgtccgt 4097302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 15323323 - 15323406
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    ||||||||||| ||| ||||||||| |||||   ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  15323323 attaagtgtttctgatgtattatatgatcatttgtcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatt 15323406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 31799025 - 31799103
Alignment:
Q  251 tgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||| |||||  |||||||| |||||||||||||  ||||||||||||||||| ||||||||||    
T  31799025 tgtttttgaagtattatatgatcatttatcatgttgttaattcaatttttaaaaaattattttataatatccgtaattt 31799103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 9051680 - 9051596
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||| |||||  |||| |||||  |||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  9051680 attaagtgtttttaaagtagcatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatatccgtaattt 9051596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 25468545 - 25468461
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||| ||| |||| | |||||||| |||||||||||||||||||| ||||||    
T  25468545 attaagtgtttttgaagtattatataatcatttatcacgttgttaaattaattttcttaaaattattttataatgtccataattt 25468461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 3841183 - 3841268
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttct--aaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||||||||||||  ||||| || ||||||||||||| |  |||||| |||||||||||||||||||||    
T  3841183 attaagtgtttttgaagtattatatcatcatttatcat-ttgttaattcaattttgtaaaaaaatcattttataatgtccgtaattt 3841268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 26318403 - 26318475
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    ||||||||||||||||||||||||| ||||   |||||||| ||||||||||||||||||| | |||||||||    
T  26318403 attaagtgtttttgaagtattatatgatcaattatcatgttgttaattcaattttctaaaagtcattttataa 26318475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 15373739 - 15373668
Alignment:
Q  251 tgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtcc 322  Q
    ||||||||| ||||||||| |||||   ||||||| ||||||||||||||||||||| ||||||||||||||    
T  15373739 tgtttttgatgtattatatgatcatttgtcatgttgttaattcaattttctaaaaatcattttataatgtcc 15373668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 10293354 - 10293430
Alignment:
Q  253 tttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||| || ||  || ||||| | |||||| |||||||||||| |||||||||| || |||||||    
T  10293354 tttttgaagtattatatgattatttatgatgttgtcaattcagttttctaaaaatcattttataatatctgtaattt 10293430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 34176711 - 34176633
Alignment:
Q  251 tgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||| |||||||| |||||  || || || ||||||||||||| ||||||| | |||||||| | ||||||||    
T  34176711 tgtttttgaaatattatatgatcatttattatattgttaattcaattttttaaaaatcaatttataattttcgtaattt 34176633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 30487517 - 30487546
Alignment:
Q  349 tcccctcctaaaccctcaatcgaaacacac 378  Q
    ||||||||||||||||||||||||||||||    
T  30487517 tcccctcctaaaccctcaatcgaaacacac 30487546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 1300664 - 1300632
Alignment:
Q  346 ccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||| ||||||||    
T  1300664 ccctcccctcctaaaccctcaatccaaacacac 1300632  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 1085636 - 1085552
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||||| | ||| ||||||||||||||||| ||||| |||||||||||||||    
T  1085636 attaagtgtttttgaagtattatatgatcatttatcatgctgttagttcaattttctaaaaatcattttctaatgtccgtaattt 1085552  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 33643366 - 33643450
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||| |||||| ||||| | ||||||    
T  33643366 attaagtgtttttgaagtattatatgatcattcatcatattattaattcaattttctaaaaatcattttaaaatgttcataattt 33643450  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 47071150 - 47071233
Alignment:
Q  246 ttaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||| |||| ||| |||||  |||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  47071150 ttaagtgtttttgaaatattttatgatcatttatcatgttgttaattaaattttctaaaaatcattttataatgtccgtaattt 47071233  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 25268362 - 25268446
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  |||| ||| || ||| |||||||||||||| |||||||||| ||||||||||    
T  25268362 attaagtgtttttgaagtattatatgatcatttatcacgttgttgattaaattttctaaaaatcattttataatttccgtaattt 25268446  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 40709438 - 40709354
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  ||||| |  |||||| ||||||||||||||||||||||||| | ||||||||    
T  40709438 attaagtgtttttgaagtattatatgatcatttatcatatcgttaatttaattttctaaaaattattttataatattcgtaattt 40709354  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 35512909 - 35512979
Alignment:
Q  259 aagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||| |||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  35512909 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattt 35512979  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 2506637 - 2506721
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||||||||||||| |||||  || || || ||||||| ||||| |||||||||||||||||| || |||||||    
T  2506637 attaagtgtttttgaagtattatatgatcatttattatattgttaattcgattttttaaaaattattttataatatctgtaattt 2506721  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 35927911 - 35927982
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    ||||||| ||||||||||||||||| |||||  |||||||| ||||||||||||||| |||||||||||||||    
T  35927911 attaagtatttttgaagtattatatgatcatttatcatgttgttaattcaattttct-aaaattattttataa 35927982  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 51303530 - 51303461
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattatttta 314  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||||||||||||  |||||| ||||||    
T  51303530 attaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttaaaaaaatcatttta 51303461  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 525245 - 525163
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||| | ||||||||||||||| |||||  ||||| || ||||||||| ||||||||||||||||||| |||||||||||||    
T  525245 attaagtttgtttgaagtattatataatcatttatcatattgttaattcaa-tttctaaaaattattttat-atgtccgtaattt 525163  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 13387065 - 13386982
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    |||||||||||||   ||||||||| |||||  |||||||| |||||||||||||||||||||  |||||| |||||| |||||    
T  13387065 attaagtgttttttgtgtattatatgatcatttatcatgttgttaattcaattttctaaaaatcgttttatgatgtccataatt 13386982  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 20607317 - 20607397
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaatt 328  Q
    ||||||||||||||||||||||||| || ||  ||||||   |||||| ||||||| |||||| |||||||||||||| |||||    
T  20607317 attaagtgtttttgaagtattatatgataatatatcatg---ttaatttaattttcaaaaaatcattttataatgtccataatt 20607397  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 40287401 - 40287324
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtcc 322  Q
    ||||||||||||||||||||||||| |||||  || || || ||||||||||||||||||| | |||| | |||||||    
T  40287401 attaagtgtttttgaagtattatataatcatttatgattttgttaattcaattttctaaaactcatttcacaatgtcc 40287324  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 1344646 - 1344730
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||| ||| |||||  | ||  |||||||| ||  ||||||||||||||||| |||||| ||||||||||||||    
T  1344646 attaagtgtttttgatgtaatatatgtttatttatcatgttgttggttcaattttctaaaaatcattttacaatgtccgtaattt 1344730  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 17622635 - 17622694
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaa 304  Q
    |||||||||||| |||||||||||| ||||   |||||||||||||||||||||| ||||    
T  17622635 attaagtgttttagaagtattatatgatcacttatcatgttattaattcaattttttaaa 17622694  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 51303419 - 51303387
Alignment:
Q  346 ccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||| ||||||||    
T  51303419 ccctcccctcctaaaccctcaatccaaacacac 51303387  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 52707751 - 52707827
Alignment:
Q  253 tttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||||||||||  |||||||| ||| |  | ||||  ||||||||||| |||||||  |||||||    
T  52707751 tttttgaagtattatatcatcatttatcatgttgttattaaatttttaaaaaaattatttgataatgttggtaattt 52707827  T

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Target: scaffold0007 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 242317 - 242398
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||| |||||||| ||||||||||||||  |||||||  ||||||||||||| ||||||| |||||||||||||||||||||    
T  242317 aagtatttttgaattattatatcatcatttatcatgtcgttaattcaattttttaaaaatcattttataatgtccgtaattt 242398  T

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Target: scaffold0095 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 8245 - 8317
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataa 317  Q
    ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||||    
T  8245 attaactgtttttgaagtattatatgatcattaatcatgttgttaattcaattttttaaaaataattttataa 8317  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 1543 - 1465
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccg 323  Q
    ||||||| ||||| ||||||||||| |||||  |||| ||| ||||||||||||||||||||| ||| |||||||||||    
T  1543 attaagtattttttaagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattctataatgtccg 1465  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 184704 - 184789
Alignment:
Q  245 attaagtgtttt-tgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||| ||||||||||||| || ||  |||||||| |||||||||||||  |||||| |||||||||||||| ||||||    
T  184704 attaagtgttttttgaagtattatatgataatatatcatgttgttaattcaattttaaaaaaatcattttataatgtccataattt 184789  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 184646 - 184614
Alignment:
Q  346 ccctcccctcctaaaccctcaatcgaaacacac 378  Q
    |||||||||||||||||||||||| ||||||||    
T  184646 ccctcccctcctaaaccctcaatccaaacacac 184614  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 52983 - 53067
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    |||||||||||||||| |||||||| |||||  |||||||| ||| |||||||||| |||||| |||| |||||| || ||||||    
T  52983 attaagtgtttttgaaatattatatgatcatttatcatgttgttagttcaattttcaaaaaatcatttcataatgcccataattt 53067  T

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Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 17640 - 17711
Alignment:
Q  247 taagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataat 318  Q
    ||||||| ||||||||||||||| || ||  ||||||||  ||||||||||||| |||||| ||||||||||    
T  17640 taagtgtatttgaagtattatatgattatttatcatgttgctaattcaattttcaaaaaatcattttataat 17711  T

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Target: scaffold1414 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 399 - 473
Alignment:
Q  245 attaagtgtttttgaagtattatatcatcatcaatcatgttattaa-ttcaattttctaaaaattattttataat 318  Q
    ||||||||||||||||||||| ||| |||||  |||||| | |||| || |||||||||||||| ||||||||||    
T  399 attaagtgtttttgaagtattttattatcatttatcatgctgttaattttaattttctaaaaatcattttataat 473  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 37484 - 37565
Alignment:
Q  248 aagtgtttttgaagtattatatcatcatcaatcatgttattaattcaattttctaaaaattattttataatgtccgtaattt 329  Q
    ||||||||||||||| |||||| ||||   |||||||| |||||| | |||||||||||| || ||||| |||| |||||||    
T  37484 aagtgtttttgaagtgttatatgatcacttatcatgttgttaattaagttttctaaaaatcatcttatattgtctgtaattt 37565  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 81546 - 81498
Alignment:
Q  256 ttgaagtattatatcatcatcaatcatgttattaattcaattttctaaa 304  Q
    |||||||||||||| |||||  |||||||||||| ||||||||| ||||    
T  81546 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 81498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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