View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_19 (Length: 412)
Name: NF17092_low_19
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 54852957 - 54852572
Alignment:
| Q |
11 |
cacagagagcaccttgctaccaactccaaaatcacaacacaatgctccaaaatcaagaaagccatttcacatgcacaaattccggtttccagcacagcaa |
110 |
Q |
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| T |
54852957 |
cacagagagcaccttgctaccaactccaaaatcacaacacaatgctccaaaatcaagaaagccatttcacatgcacaaattccggtttccagcacagcaa |
54852858 |
T |
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| Q |
111 |
agttacaactgagctgaccaaggagttaggcatcttagatatcgctccaagccactaacaggccacgatcgacaaaagaaaatgctagaaagcatctact |
210 |
Q |
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| T |
54852857 |
agttacaactgagctgaccaaggagttaggcatcttagatatcgctccaagccactaacaggccaggatcgacaaaagaaaatgctaggaagcatctact |
54852758 |
T |
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| Q |
211 |
aatggatcgccaacaatcaaacatggattttgagatactaccaagataacaccttaatcacccaaaaaacaaacgaacttctgagactgagttaaaaata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
54852757 |
aatggatcgccaacaatcaaacatggattttgagatactaccaatataacaccttaatcacccaaaaaacaaacgaacctttgagactgagttaaaaata |
54852658 |
T |
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| Q |
311 |
catgaacagccttcacatttcgctgaacacaactgccgcaatttgaaattcaagaagcccaccacaccaaacatacttgaatgtat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54852657 |
catgaacagccttcacatttcgctgaacacaactgccgcaatttgaaattcaagaagcccaccacaccaaacatacttgaatgtat |
54852572 |
T |
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