View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_2 (Length: 660)
Name: NF17092_low_2
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 25 - 649
Target Start/End: Complemental strand, 564942 - 564318
Alignment:
| Q |
25 |
ttgttcttgtcttaattatcctatttaattaaccaaatcaaccttccattaacacagatcagagcctaaactaatcaaatttccatggaaagaaaaacac |
124 |
Q |
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| T |
564942 |
ttgttcttgtcttaattatcttatttaattaaccaaatcaaccttccattaacacggatcagagcctaaactaatcaaatttccatggaaagaaaaacac |
564843 |
T |
|
| Q |
125 |
acattgctgtggtttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564842 |
acattgctgtggtttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcac |
564743 |
T |
|
| Q |
225 |
cttaatcattccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564742 |
cttaatcattccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatc |
564643 |
T |
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| Q |
325 |
aacttgccaccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatctatcattgatgcattgaaaacaaaaacatcaaaac |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
564642 |
aacttgccaccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatatatcattgatgcattgaaaacaaaaacatcaaaac |
564543 |
T |
|
| Q |
425 |
tagttgctataatagctgattattttgcctatgaagtgttctcatttgccaagaaactcaacattttatcatatacatattttccttcatcagccacagt |
524 |
Q |
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| T |
564542 |
tagttgctataatagctgattattttgcctatgaagtgttctcatttgccaagaaactcaacattttatcatatacatattttccttcatcagccacagt |
564443 |
T |
|
| Q |
525 |
gctatcactttgttttcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatcccaggttgtgtaccgatt |
624 |
Q |
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| T |
564442 |
attatcactttgttttcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatcccaggttgtgtaccgatt |
564343 |
T |
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| Q |
625 |
caaggaaccgatcttccatcttcat |
649 |
Q |
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| T |
564342 |
caaggaaccgatcttccatcttcat |
564318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 609
Target Start/End: Complemental strand, 874093 - 874024
Alignment:
| Q |
540 |
tcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatccca |
609 |
Q |
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| T |
874093 |
tcatttaaaagttctagataaaataatttctggtgaatttaaagacttgcaagaaccaatcataatccca |
874024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 874194 - 874139
Alignment:
| Q |
89 |
cctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtc |
144 |
Q |
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| T |
874194 |
cctaaactaatcaaatttccatggatagaaaaacattcattgctttggtttaagtc |
874139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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