View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_20 (Length: 407)
Name: NF17092_low_20
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34679878 - 34680189
Alignment:
| Q |
1 |
tatgtatatatgtacttggtcttgatgcagtcaagagagacaaacaagtctattgtcatgttaatagtttttacagacactcattcagacacgtatacgt |
100 |
Q |
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| T |
34679878 |
tatgtatctatgtacttggtcttgatgcagtcaagagagacaaacaagtctattgtcatgttaatagtttttacagacactcattcagacacgtatacgt |
34679977 |
T |
|
| Q |
101 |
gtttctttgatatgtcaacttcattttagtgtacccaaaatattcccacttttttatttcatatacctaattactatatacttatcaaattccacttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
34679978 |
gtttctttgatatgtcaacttcattttagtgtacccaaaatattcccacttttttatttcatatacctaattacca-gtacttatcaaattccacttcac |
34680076 |
T |
|
| Q |
201 |
aattactcctaaacaatcaagttcaatttgatgtcactctcaccattaatgtcaacaccaaatccatttcttctaatgtgcatatgtactacataaagaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680077 |
aattactcctaaacaatccagttcaatttgatgtcactctcaccattaatgtcaacaccaaatccatttcttctaatgtgcatatgtactacataaagaa |
34680176 |
T |
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| Q |
301 |
aataaattttgta |
313 |
Q |
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| T |
34680177 |
attaaattttgta |
34680189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 34680441 - 34680519
Alignment:
| Q |
311 |
gtatcaactaacaggaaaaagggtactttttgttaagcacaaattgagctaatgactagcagttacactaaagctgact |
389 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34680441 |
gtatcaactaaaaggaaaaagagtactttttgttaagcacaaattgggctaatgactagcagttacactaaagctgact |
34680519 |
T |
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