View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_22 (Length: 392)

Name: NF17092_low_22
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_22
NF17092_low_22
[»] chr8 (3 HSPs)
chr8 (179-377)||(29234393-29234591)
chr8 (35-180)||(29234616-29234761)
chr8 (84-166)||(29254408-29254490)
[»] chr5 (1 HSPs)
chr5 (86-166)||(14496575-14496655)
[»] chr3 (1 HSPs)
chr3 (282-354)||(43814739-43814812)
[»] chr2 (2 HSPs)
chr2 (84-112)||(30918796-30918824)
chr2 (84-112)||(30928629-30928657)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 179 - 377
Target Start/End: Complemental strand, 29234591 - 29234393
Alignment:
Q  179 cagcctttgctcctttgtaattcccagtcacatacccaattgaatgctgcattatttcattttcaacaatatcataaggtttaatttggagaacaattaa 278  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234591 cagcctttgctcctttgtaattcccagtcacataccctattgaatgctgcattatttcattttcaacaatatcataaggtttaatttggagaacaattaa 29234492  T
Q  279 atctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaagatttaaataaatgaaatcgaaattgctacgttggatat 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234491 atctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaagatttaaataaatgaaatcgaaattgctacgttggatat 29234393  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 29234761 - 29234616
Alignment:
Q  35 aaaataagttaaggaaatgaatggattaactaatgagaataatatttagcatgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatca 134  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234761 aaaaaaagttatggaaatgaatggattaactaatgagaataatatttagcatgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatca 29234662  T
Q  135 gataaaatccatatttgagccaagctgaattctccttcgatctcca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29234661 gataaaatccatatttgagccaagctgaattctccttcgatctcca 29234616  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 29254490 - 29254408
Alignment:
Q  84 catgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc 166  Q
    |||||||||||||||||||||||||||||   ||| | |||||||| | |||| |  ||||| ||||| |||||||| |||||    
T  29254490 catgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattc 29254408  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 14496575 - 14496655
Alignment:
Q  86 tgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc 166  Q
    |||||||||||||||||||||||||||| | ||||||||||||| | |||| |  | ||| ||||| | ||||||||||||    
T  14496575 tgcctgccaaccagcttcaatggtgttaagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattc 14496655  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 43814739 - 43814812
Alignment:
Q  282 taatattggtttgtggttaagtttcttgttttagaagataaaaat-agtcagagcaaagatttaaataaatgaa 354  Q
    |||| |||||||||| |||||||| ||| | |||||||||||||| |||  |||||||||| ||||||||||||    
T  43814739 taatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaa 43814812  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 30918796 - 30918824
Alignment:
Q  84 catgcctgccaaccagcttcaatggtgtt 112  Q
    |||||||||||||||||||||||||||||    
T  30918796 catgcctgccaaccagcttcaatggtgtt 30918824  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 30928629 - 30928657
Alignment:
Q  84 catgcctgccaaccagcttcaatggtgtt 112  Q
    |||||||||||||||||||||||||||||    
T  30928629 catgcctgccaaccagcttcaatggtgtt 30928657  T

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