View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17092_low_25 (Length: 377)
Name: NF17092_low_25
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 36412712 - 36413056
Alignment:
| Q |
19 |
aagaagtgattatggagttgtaatcgaagatatttggattgggcatgtctgtgaaaagagtttctgcatagcgaaaatcgccgcgtggtgagagagcgaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412712 |
aagaagtgattatggagttgtaatcgaagatatttggattgggaatgtgtgtgaaaagagtttctgcatagcgaaaatcgccgcgtggtgagagagcgaa |
36412811 |
T |
|
| Q |
119 |
gaatgctaggattctgctggaaatgtaggagaaacgagtgaggttgttggtgatggcatgagcgtggatttgttttgtttgtttcatggttaggttttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412812 |
gaatgctaggattctgctggaaatgtaggagaaacgagtgaggttgttggtgatggcatgagcgtggatttgttttgtttgtttcatggttaggttttgc |
36412911 |
T |
|
| Q |
219 |
cattgttgtaagagatgaagacatggattgtttctgattctgattgagcctaccatatgatgttgcttaatacataagtttcacttag---------aac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36412912 |
cattgttgtaagagatgaagacatggattgt------ttctgattgagcctaccatatgatgttgcttaatacataagtttcacttagaaactcagcaac |
36413005 |
T |
|
| Q |
310 |
gattacaaatgacaatgatataa-----gtatggtagtaaatcaaaattaa |
355 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
36413006 |
gattacaaatgacaatgatttaatctatgtatggtagtaaatcaaaattaa |
36413056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 52097206 - 52097442
Alignment:
| Q |
21 |
gaagtgattatggagttgtaatcgaagatatttggattgggcatgtctgtgaaaagagtttctgcatagcgaaaatcgccgcgtggtgagagagcgaaga |
120 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |||||| ||| |||| |
|
|
| T |
52097206 |
gaagtgattatagagttgtaatcgaatatatttggattgggcatgtgtgtgaagagagtttctgcatagcgaaaatcgccacgcggtgaggcagcaaaga |
52097305 |
T |
|
| Q |
121 |
atgctaggattctgctggaaatgtaggagaaacgagtgaggttgttggtgatggcatgagcgtggatttgttttgtttgtttcatggttaggttttgcca |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52097306 |
atgctaggattctgctggagatgtaggagaaacgagtgaggttgttggcaatagcatgagcgtggatttgttttgtttgtttcatggttaggttttgcca |
52097405 |
T |
|
| Q |
221 |
ttgttgtaagagatgaagacatggattgtttctgatt |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52097406 |
ttgttgtaagagatgaagacatggactgtttctgatt |
52097442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University