View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_26 (Length: 376)
Name: NF17092_low_26
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 67 - 358
Target Start/End: Original strand, 43865918 - 43866209
Alignment:
| Q |
67 |
aatataaaacacatatgtgctttgatttgaatgcttctgaaaacagattgttgagtcaaatggtggaacaatatggaataaggaagtggtctcatattgc |
166 |
Q |
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| T |
43865918 |
aatataaaacacatatgtgctttgatttgaatgcttctgaaaacagattgttgagtcaaatggtggaacaatatggaataaggaagtggtctcatattgc |
43866017 |
T |
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| Q |
167 |
tctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataaccatttaagaccagacataaaggttccatttttatttttcacacacata |
266 |
Q |
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| T |
43866018 |
tctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataaccatttaagaccagacataaaggttccatttttatttttcacacacata |
43866117 |
T |
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| Q |
267 |
tataaaataaattaatagagatacacactttatacaactgagtctatatatacaatgtcatcaatgattaatacatgatccaatatttgaat |
358 |
Q |
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| T |
43866118 |
tataaaataaattaatagagatacacactttatacaactgagtctatatgtacaatgtcatcaatgattaatacatgatccaatatttgaat |
43866209 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 34916270 - 34916340
Alignment:
| Q |
147 |
aggaagtggtctcatattgctctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataa |
217 |
Q |
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| T |
34916270 |
aggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataa |
34916340 |
T |
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