View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_27 (Length: 372)

Name: NF17092_low_27
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_27
NF17092_low_27
[»] chr8 (12 HSPs)
chr8 (9-372)||(15114630-15114994)
chr8 (303-368)||(9548077-9548142)
chr8 (9-69)||(15282371-15282431)
chr8 (9-69)||(15462740-15462800)
chr8 (15-69)||(15442577-15442631)
chr8 (267-368)||(7974778-7974879)
chr8 (15-66)||(15311660-15311711)
chr8 (15-66)||(15492029-15492080)
chr8 (281-366)||(29797946-29798034)
chr8 (327-368)||(8777786-8777827)
chr8 (302-359)||(11196244-11196301)
chr8 (308-360)||(8637254-8637306)
[»] chr1 (10 HSPs)
chr1 (303-366)||(3694015-3694078)
chr1 (303-368)||(30693352-30693417)
chr1 (327-366)||(9238256-9238295)
chr1 (279-368)||(38067137-38067227)
chr1 (311-369)||(47543615-47543673)
chr1 (303-368)||(5056322-5056387)
chr1 (327-368)||(35310304-35310345)
chr1 (266-368)||(3739805-3739907)
chr1 (303-364)||(6061488-6061549)
chr1 (303-368)||(15343239-15343304)
[»] chr4 (9 HSPs)
chr4 (266-364)||(12276841-12276939)
chr4 (281-368)||(54235228-54235315)
chr4 (281-367)||(4423167-4423253)
chr4 (327-368)||(4479628-4479669)
chr4 (325-368)||(55762914-55762957)
chr4 (325-368)||(30848642-30848685)
chr4 (266-368)||(24980616-24980718)
chr4 (331-368)||(7270190-7270227)
chr4 (326-367)||(33759429-33759470)
[»] chr3 (7 HSPs)
chr3 (281-368)||(32221476-32221563)
chr3 (291-357)||(8413802-8413868)
chr3 (281-349)||(37330963-37331031)
chr3 (311-368)||(26914485-26914542)
chr3 (303-368)||(31280172-31280237)
chr3 (327-368)||(40905819-40905860)
chr3 (325-357)||(46733045-46733077)
[»] chr7 (4 HSPs)
chr7 (303-368)||(30794458-30794523)
chr7 (306-368)||(23971216-23971278)
chr7 (306-368)||(44816484-44816546)
chr7 (303-368)||(18732018-18732083)
[»] chr2 (14 HSPs)
chr2 (303-368)||(11386326-11386391)
chr2 (281-368)||(16180441-16180528)
chr2 (325-368)||(33829406-33829449)
chr2 (266-368)||(10459283-10459385)
chr2 (302-363)||(33615273-33615334)
chr2 (268-368)||(43398831-43398931)
chr2 (326-361)||(5388841-5388876)
chr2 (303-368)||(13453598-13453664)
chr2 (326-368)||(15660702-15660744)
chr2 (327-368)||(2884273-2884314)
chr2 (307-368)||(5713257-5713318)
chr2 (303-368)||(29291092-29291157)
chr2 (316-368)||(17437167-17437219)
chr2 (325-369)||(41912127-41912171)
[»] chr5 (13 HSPs)
chr5 (300-368)||(33498378-33498446)
chr5 (265-368)||(39030580-39030683)
chr5 (293-368)||(42324898-42324973)
chr5 (266-368)||(34252734-34252836)
chr5 (327-367)||(20219514-20219554)
chr5 (266-368)||(9956489-9956591)
chr5 (327-369)||(14325890-14325932)
chr5 (311-360)||(968318-968367)
chr5 (306-367)||(14646393-14646454)
chr5 (316-357)||(14973993-14974034)
chr5 (303-368)||(16500574-16500639)
chr5 (304-365)||(19644427-19644488)
chr5 (292-368)||(15119314-15119390)
[»] chr6 (9 HSPs)
chr6 (329-368)||(28596092-28596131)
chr6 (281-368)||(31323831-31323918)
chr6 (292-369)||(2282414-2282491)
chr6 (303-368)||(9829908-9829973)
chr6 (303-368)||(35003776-35003841)
chr6 (316-360)||(8437815-8437859)
chr6 (277-368)||(8211800-8211891)
chr6 (325-367)||(31522658-31522700)
chr6 (318-366)||(1937664-1937712)
[»] scaffold0034 (1 HSPs)
scaffold0034 (281-367)||(94964-95050)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 15114994 - 15114630
Alignment:
Q  9 gagtagcaaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaagattgttataaatttcatgtggtaaataaaatcgaataaaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15114994 gagtagcaaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaagattgttataaatttcatgtggtaaataaaatcgaataaaca 15114895  T
Q  109 gtacaattcatgttaatcaccaaaattggcgataatcatcatcatcatgtgttacaagaaaagtaaaaggttgagaaaagatatatcttaacttgtagta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15114894 gtacaattcatgttaatcaccaaaattggcgataatcatcatcatcatgtgttacaagaaaagtaaaaggttgagaaaagatatatcttaacttgtagta 15114795  T
Q  209 attttattttatcttctatgacatcaaaacaacttaaatagattattgcttataagttactccctccattcaaaaatgtaggaaaaaattggt-aaacat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||    
T  15114794 attttattttatcttctatgacatcaaaacaacttaaatagattattgcttataagttactccctccatccaaaaatgtaagaaaaaattgatcaaacat 15114695  T
Q  308 aaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttttctt 372  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15114694 aaattgacgtatttagaacaaattttgaatcaaatacattaatttttgttgaccaattttttctt 15114630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 9548077 - 9548142
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| |||| |||||||| |||||||||||| |||||||| ||||||||||||| ||||||||    
T  9548077 aacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaattttt 9548142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 15282371 - 15282431
Alignment:
Q  9 gagtagcaaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaagat 69  Q
    |||| |||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  15282371 gagttgcaaagaacacaagtccatgacatgatgtttatctgcaaaataaatcaataaagat 15282431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 15462740 - 15462800
Alignment:
Q  9 gagtagcaaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaagat 69  Q
    |||| |||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  15462740 gagttgcaaagaacacaagtccatgacatgatgtttatctgcaaaataaatcaataaagat 15462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 15442577 - 15442631
Alignment:
Q  15 caaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaagat 69  Q
    |||||||||||||||||||||||||| |||  ||| |||||||||||||||||||    
T  15442577 caaaggacacaagtccatgacatgatgtttttctgcaaaataaatcaataaagat 15442631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 7974778 - 7974879
Alignment:
Q  267 actccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattt 366  Q
    ||||||||| | ||||||| ||  ||| ||| ||| ||||||||||||||||||| | |||||||||||   ||||| ||||| |||| |||||||||||    
T  7974778 actccctccttccaaaaatataaaaaagaatgggtcaacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaattt 7974877  T
Q  367 tt 368  Q
    ||    
T  7974878 tt 7974879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 15311660 - 15311711
Alignment:
Q  15 caaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaa 66  Q
    ||||| ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  15311660 caaagaacacaagtccacgacatgatatttttctgcaaaataaatcaataaa 15311711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 15492029 - 15492080
Alignment:
Q  15 caaaggacacaagtccatgacatgatatttacctggaaaataaatcaataaa 66  Q
    ||||| ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  15492029 caaagaacacaagtccacgacatgatatttttctgcaaaataaatcaataaa 15492080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 29797946 - 29798034
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaa---atatattaatttttgttgaccaattt 366  Q
    |||||||| | ||||||  || |||||||||| | |||||| | |||||||||||| |||   ||| ||||||||||||||||||||||    
T  29797946 aaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 8777827 - 8777786
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| |||||||||||| ||||||||| ||||||||    
T  8777827 aaattttgaaccaaatatattaacttttgttgatcaattttt 8777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 11196244 - 11196301
Alignment:
Q  302 aaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttga 359  Q
    |||| ||| |||| |||||||  ||||||||||||| ||||| |||||||||||||||    
T  11196244 aaacgtaagttgatgtatttaatacaaattttgaattaaatacattaatttttgttga 11196301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 8637306 - 8637254
Alignment:
Q  308 aaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgac 360  Q
    ||||||| |||||| || ||||||||||| ||||||||| ||||||| |||||    
T  8637306 aaattgatgtatttggaccaaattttgaaccaaatatatcaattttttttgac 8637254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 3694015 - 3694078
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattt 366  Q
    |||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  3694015 aacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaattt 3694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 30693417 - 30693352
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||  ||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||||||    
T  30693417 aacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaattttt 30693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 9238256 - 9238295
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattt 366  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  9238256 aaattttgaatcaaatatattaatttttgttgatcaattt 9238295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 38067137 - 38067227
Alignment:
Q  279 caaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaa-tttttgttgaccaattttt 368  Q
    |||||||||| ||| ||||  ||  ||||||||||| |||||||| | |||||||||||||| ||| |||| ||||| |||||||||||||    
T  38067137 caaaaatgtaagaagaaatgagtggacataaattgatgtatttagtataaattttgaatcaattatgttaattttttattgaccaattttt 38067227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 47543673 - 47543615
Alignment:
Q  311 ttgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttttt 369  Q
    |||| |||||| | |||||||||||| |||||  |||||||||||||||||||||||||    
T  47543673 ttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaatttttt 47543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 5056322 - 5056387
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| |||| ||||||   |||||||||||||||||||  ||||||||| |||||||||||||    
T  5056322 aacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaattttt 5056387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 35310304 - 35310345
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  35310304 aaattttaaatcaaatacattaatttttgttgaccaattttt 35310345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 3739805 - 3739907
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||||||| | | ||||| || | |||||||||| |||  || || | |||||| | ||||||||| || |||||| ||||| |||||||||||||||    
T  3739805 tactccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 3739904  T
Q  366 ttt 368  Q
    |||    
T  3739905 ttt 3739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 6061488 - 6061549
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaat 364  Q
    ||||||| || | |||| ||| ||||||||| || |||||| ||||||||||||||||||||    
T  6061488 aacataagttaatgtatctagtacaaattttaaaacaaatacattaatttttgttgaccaat 6061549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 15343304 - 15343239
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| |||| |||||||  |||| |||| |||||||| |||| | ||||||||||||||||||    
T  15343304 aacataagttgatgtatttaatacaattttttaatcaaatttattgacttttgttgaccaattttt 15343239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 12276939 - 12276841
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaat 364  Q
    |||||| ||||||| ||||| || | |||||| ||| ||||||| |||| |||||||| | ||||||||||||||||| ||||| ||||| ||||||||    
T  12276939 tactccttccattccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaat 12276841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 54235228 - 54235315
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| | ||||||  || || ||||||||| |||||||| |||||||||||| |||||| ||||| ||||||||| ||||||||    
T  54235228 aaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaattttt 54235315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 4423253 - 4423167
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    |||||||| | |||||| | | || |||| |||| |||||| | |||||||||||||||||||||||||||||| |||| |||||||    
T  4423253 aaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaatttt 4423167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 4479628 - 4479669
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4479628 aaattttgaatcaaatatattaatttttgttgatcaattttt 4479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 55762914 - 55762957
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  55762914 acaaatttttaatcaaatatattaacttttgttgaccaattttt 55762957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 30848642 - 30848685
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  30848642 acaaattttgaacaaaatacattaatttttgttgaccaattttt 30848685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 24980616 - 24980718
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||||||| ||| |||||||| | |||||| | | ||||||| |||| |||| |   |||||||||| |  ||||| |||||||||||||||| ||||    
T  24980616 tactccctccgttctaaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatt 24980715  T
Q  366 ttt 368  Q
    |||    
T  24980716 ttt 24980718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 7270227 - 7270190
Alignment:
Q  331 tttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  7270227 tttgaatcaaatatattaatttttattgatcaattttt 7270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 33759429 - 33759470
Alignment:
Q  326 caaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    |||||||||||  ||||| |||||||||||||||||||||||    
T  33759429 caaattttgaactaaatacattaatttttgttgaccaatttt 33759470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 32221476 - 32221563
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| | |||||||| | | |||||||||| |||||| | |||||||||||| |||||| ||||| |||||||||| |||||||    
T  32221476 aaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaattttt 32221563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 8413802 - 8413868
Alignment:
Q  291 aaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgtt 357  Q
    ||||||||||| || ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||    
T  8413802 aaaaaattggtcaatataaattgacgtatttcatacaaattttgaattaaatgtataaatttttgtt 8413868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 37331031 - 37330963
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaa 349  Q
    |||||||| | |||||| ||| ||||||||||||||||| ||| |||||||||||| || ||| |||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaaccatatacattaa 37330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 26914485 - 26914542
Alignment:
Q  311 ttgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||| |||||||| | |||||||||| || ||| ||||||||||||||| ||||||||    
T  26914485 ttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaattttt 26914542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 31280237 - 31280172
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| | |||| | | |||||||||||| |||||| ||||| ||||||||| ||||||||    
T  31280237 aacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaattttt 31280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 40905860 - 40905819
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| |||||| ||||| ||||||||||||||||||    
T  40905860 aaattttgaaccaaataaattaacttttgttgaccaattttt 40905819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 46733077 - 46733045
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgtt 357  Q
    ||||||||||||||||||| |||||||||||||    
T  46733077 acaaattttgaatcaaatacattaatttttgtt 46733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 30794523 - 30794458
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||  | |||||| | ||||||||||||||||||||||||| ||||||||||||| ||||    
T  30794523 aacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaatttt 30794458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 23971216 - 23971278
Alignment:
Q  306 ataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||| |||| |||||| | ||||||||||||  ||||||||| ||||||||||||||||||||    
T  23971216 ataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt 23971278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 44816546 - 44816484
Alignment:
Q  306 ataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||| ||| |||||| | |||||||||||| |||||| ||||| |||||||| |||||||||    
T  44816546 ataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgttggccaattttt 44816484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 18732018 - 18732083
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||| |||| | | | |||||||||| |||||| ||||| |||| |||||||||||||    
T  18732018 aacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 11386391 - 11386326
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| |||| ||||||   ||||||||||||| ||||||||||||||||||||| ||||||||    
T  11386391 aacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaattttt 11386326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 16180441 - 16180528
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| | ||||||| || |||||||||||| ||||| |  | |||||||||| |||||| ||||| ||||||||||||| ||||    
T  16180441 aaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaatttt 16180528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 33829449 - 33829406
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  33829449 acaaattttgtaccaaatatattaatttttgttgaccaattttt 33829406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 10459385 - 10459283
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||||||| | | |||||||| | ||| |||||| ||||||| |||| | || |   |||||||||||| |||||| ||||| |||||||||||||||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatt 10459286  T
Q  366 ttt 368  Q
    |||    
T  10459285 ttt 10459283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 33615334 - 33615273
Alignment:
Q  302 aaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaa 363  Q
    |||||||| |||| ||||||   |||||||||||||||||||||||||| ||| ||||||||    
T  33615334 aaacataagttgatgtatttgatacaaattttgaatcaaatatattaatatttattgaccaa 33615273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 43398831 - 43398931
Alignment:
Q  268 ctccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    |||||||  ||| |||||||| | |||||| ||| || |||| |||| |||||| | |||||||||||| |||||| ||||| ||||||| || ||||||    
T  43398831 ctccctctgttctaaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttt 43398930  T
Q  368 t 368  Q
    |    
T  43398931 t 43398931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 5388876 - 5388841
Alignment:
Q  326 caaattttgaatcaaatatattaatttttgttgacc 361  Q
    |||||||||||||||||| |||||||||||||||||    
T  5388876 caaattttgaatcaaatacattaatttttgttgacc 5388841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 13453664 - 13453598
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaat-ttttgttgaccaattttt 368  Q
    |||||||||||| | |||||| ||||||||||||  ||| |||||||| ||||||||| ||||||||    
T  13453664 aacataaattgatgcatttagcacaaattttgaactaaagatattaattttttgttgatcaattttt 13453598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 15660702 - 15660744
Alignment:
Q  326 caaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||||||||| |||||||| |||||| ||||||||    
T  15660702 caaattttgaatcaaatacattaatttgtgttgatcaattttt 15660744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 2884314 - 2884273
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| |||||| |||||||||||||||| |||||||    
T  2884314 aaattttgaaccaaatacattaatttttgttgacaaattttt 2884273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 5713257 - 5713318
Alignment:
Q  307 taaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| |||||||  ||||||||||||| |||||  |||||||| ||||||||| ||||    
T  5713257 taaattgatgtatttaatacaaattttgaattaaatacgttaattttggttgaccaaatttt 5713318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 29291092 - 29291157
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||| |||| ||| | |  ||||||| |||||||||||| |||| |||||||||||||    
T  29291092 aacataaattgatgtatctagtaaattttttgaaccaaatatattaacttttattgaccaattttt 29291157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 17437167 - 17437219
Alignment:
Q  316 gtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||| | ||||||||||||  ||||| |||||||||||||||| |||||||    
T  17437167 gtatttggtacaaattttgaactaaatacattaatttttgttgacaaattttt 17437219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 41912127 - 41912171
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgttgaccaatttttt 369  Q
    |||||||||||| || ||| ||||||||||||||| |||||||||    
T  41912127 acaaattttgaaccagatacattaatttttgttgaacaatttttt 41912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 33498446 - 33498378
Alignment:
Q  300 gtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| |||| |||||| | |||||||||||| |||||||||| |||||||||| |||| ||||    
T  33498446 gtaaacataagttgatgtattttgtacaaattttgaaccaaatatattgatttttgttggccaactttt 33498378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 368
Target Start/End: Complemental strand, 39030683 - 39030580
Alignment:
Q  265 ttactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaat 364  Q
    ||||||||||||| | ||||| || | ||||||| || |||| || || | |||||| | ||||||||| || |||||| ||||| ||||||||||||||    
T  39030683 ttactccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaat 39030584  T
Q  365 tttt 368  Q
    ||||    
T  39030583 tttt 39030580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 42324898 - 42324973
Alignment:
Q  293 aaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||||| || ||||||||| |||||| | | ||||||| || |||||| ||||| ||||||||||||||||||    
T  42324898 aaaattggtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaattttt 42324973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 34252836 - 34252734
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||||||| | | |||||||| | |||||| ||| ||||||| |||| | || | | | |||||||||| |||||| ||||| |||||||||||||||    
T  34252836 tactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatt 34252737  T
Q  366 ttt 368  Q
    |||    
T  34252736 ttt 34252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 20219554 - 20219514
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  20219554 aaattttgaatcaaatatattaacttttgttgatcaatttt 20219514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 9956489 - 9956591
Alignment:
Q  266 tactccctccattcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||| ||||| | |||||||| | |||||| ||| ||||||  |||| |||| |   | ||||||||||||||||| ||||| ||||||| |||||||    
T  9956489 tactccatccatcccaaaatgtaagtaaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaacttttgttaaccaatt 9956588  T
Q  366 ttt 368  Q
    |||    
T  9956589 ttt 9956591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 14325932 - 14325890
Alignment:
Q  327 aaattttgaatcaaatatattaatttttgttgaccaatttttt 369  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||    
T  14325932 aaattttgaatcaaatacattaatttttgttgatcaaattttt 14325890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 968318 - 968367
Alignment:
Q  311 ttgacgtatttagaacaaattttgaatcaaatatattaatttttgttgac 360  Q
    |||| |||||| | ||||||||||||  ||||||||||||||||||||||    
T  968318 ttgatgtatttggtacaaattttgaactaaatatattaatttttgttgac 968367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 14646393 - 14646454
Alignment:
Q  306 ataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    ||||||| | |||||||| ||||||||||||||| ||| |||||||||| || | |||||||    
T  14646393 ataaattaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaatttt 14646454  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 14974034 - 14973993
Alignment:
Q  316 gtatttagaacaaattttgaatcaaatatattaatttttgtt 357  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  14974034 gtatttggcacaaattttaaatcaaatatattaatttttgtt 14973993  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 16500639 - 16500574
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||| |||| | ||  |||||||||| ||| || ||||||||||||||| ||||||||    
T  16500639 aacataaattgatgtatctggattaaattttgaaccaattacattaatttttgttgaacaattttt 16500574  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 19644427 - 19644488
Alignment:
Q  304 acataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatt 365  Q
    |||||| |||| |||||||| | |||||||||| ||||||  |||||||||||||| |||||    
T  19644427 acataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttgatcaatt 19644488  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 15119390 - 15119314
Alignment:
Q  292 aaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||| || |||| || |  ||||||  ||||||||||||||||||| ||||| |||| ||||| |||||||    
T  15119390 aaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaattttt 15119314  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 28596131 - 28596092
Alignment:
Q  329 attttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28596131 attttgaaccaaatatattaatttttgttgaccaattttt 28596092  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 31323918 - 31323831
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||| | |||||| ||| ||||||| |||| |||| | | ||||||||||||  ||||| ||||| ||||||||||||||||||    
T  31323918 aaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaattttt 31323831  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 2282491 - 2282414
Alignment:
Q  292 aaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttttt 369  Q
    ||||||| || |||||||||||| ||||||   |||| |||||||  ||||| ||||| |||||||||||||||||||    
T  2282491 aaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaatttttt 2282414  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 9829973 - 9829908
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    |||||||||||| |||||| | ||||||||| ||  ||||| |||||||||||||||| |||||||    
T  9829973 aacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 9829908  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 35003841 - 35003776
Alignment:
Q  303 aacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||| ||||  ||||| | ||||||||||||||||||| |||||||||| || ||||||||||    
T  35003841 aacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaattttt 35003776  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 8437815 - 8437859
Alignment:
Q  316 gtatttagaacaaattttgaatcaaatatattaatttttgttgac 360  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||    
T  8437815 gtatttggtacaaattttgaatcaaatacattaatttttgttgac 8437859  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 8211891 - 8211800
Alignment:
Q  277 ttcaaaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaattttt 368  Q
    ||||||||| || | |||||| | | |||||||||| | |||||||| |||||||| | | |||||||||||| |||| |||| ||||||||    
T  8211891 ttcaaaaatataagtaaaaatagatcaacataaattaatgtatttagtacaaatttcggaccaaatatattaaattttattgatcaattttt 8211800  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 31522658 - 31522700
Alignment:
Q  325 acaaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  31522658 acaaattttgaatcaaatgcattaacttttgttgaccaatttt 31522700  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 1937712 - 1937664
Alignment:
Q  318 atttagaacaaattttgaatcaaatatattaatttttgttgaccaattt 366  Q
    |||||| | ||||||| |||||||||||| ||||||||| |||||||||    
T  1937712 atttagtataaattttaaatcaaatatataaatttttgtcgaccaattt 1937664  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 95050 - 94964
Alignment:
Q  281 aaaatgtaggaaaaaattggtaaacataaattgacgtatttagaacaaattttgaatcaaatatattaatttttgttgaccaatttt 367  Q
    ||||||||  ||||||||||| ||||||| |||| |||||| | ||||||||||||   |||| |||||||||| |||| |||||||    
T  95050 aaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaatttt 94964  T

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