View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_30 (Length: 359)
Name: NF17092_low_30
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 35640505 - 35640178
Alignment:
| Q |
19 |
gtcccaagcttgggtcattcgaaagcaaaatgttgaacttcttaataataatgataaagtagacatacaccacgaaaattggaaaggtaagcttgccttt |
118 |
Q |
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| T |
35640505 |
gtcccaagcttgggtcattcgaaagcaaaatgttgaacttcttaataataatgataaagtagacatacaccacgaaaattggaaaggtaagcttgccttt |
35640406 |
T |
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| Q |
119 |
cacaccgatttattttccataagttggttttgttaggtacttgttactattataaaccacacatgactcatcacatgatgaaagcaattgagattttttg |
218 |
Q |
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| T |
35640405 |
cacaccgatttattttccataagttggttttgttaggtacttgttactattataaaccacacatgactcatcacatgatgaaagcaattgagattttttg |
35640306 |
T |
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| Q |
219 |
gtggaactaatggacctcattcattcattctagaaacagtttcctgcgtttgttgcacgctttgaggcttgtcatgttcttccacgttcaattttgtttt |
318 |
Q |
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| T |
35640305 |
gtggaactaatggacctcattcattcattctagaaacagtttcctgcgtttgttgcacgctttgaggcttgtcatgttcttccacgttcaattttgtttt |
35640206 |
T |
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| Q |
319 |
gctcatactttcaattttctccctattc |
346 |
Q |
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| T |
35640205 |
gctcatactttcaattttctccctattc |
35640178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 35643888 - 35643804
Alignment:
| Q |
98 |
tggaaaggtaagcttgcctttcacaccgatttattttccataagttggttttgttaggtacttgttactattataaaccacacatg |
183 |
Q |
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| T |
35643888 |
tggaaaggtaggtttgcctttcacaccgacttattttccataagttggttttgttaggtacttgttacta-tataaaccacacatg |
35643804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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