View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_31 (Length: 357)
Name: NF17092_low_31
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 51214495 - 51214820
Alignment:
| Q |
18 |
agaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcagggtttagtca |
117 |
Q |
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| T |
51214495 |
agaacagtttctgctttctgtgccgaagagaaagtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcagggtttagtca |
51214594 |
T |
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| Q |
118 |
gtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaacttcgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214595 |
gtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaacttcgat |
51214694 |
T |
|
| Q |
218 |
gtcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattcttttagcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214695 |
gtcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattcttttagcatt |
51214794 |
T |
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| Q |
318 |
aaacatttaatttcttttcaggtatt |
343 |
Q |
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| T |
51214795 |
aaacatttaatttcttttcaggtatt |
51214820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 29935524 - 29935477
Alignment:
| Q |
17 |
aagaacagtttctgctttctgtgccgaagagaaggtgatggaattata |
64 |
Q |
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| T |
29935524 |
aagaacagtttcttctttctgtgctgaagagaaggtgatggaattata |
29935477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 51201434 - 51201481
Alignment:
| Q |
17 |
aagaacagtttctgctttctgtgccgaagagaaggtgatggaattata |
64 |
Q |
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|||||||||| || |||||||| | ||||||||||||||||||||||| |
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| T |
51201434 |
aagaacagttgcttctttctgttctgaagagaaggtgatggaattata |
51201481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 49735614 - 49735391
Alignment:
| Q |
18 |
agaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcagggtttagtca |
117 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||| |||| | |
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| T |
49735614 |
agaacagtttccgctttctgtgctgaagagaaggtgatggagttataccaaaagaaatgtgtagtaccagtacagacaggaaaaaggcagggtatagtta |
49735515 |
T |
|
| Q |
118 |
gtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaacttcgat |
217 |
Q |
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||||| ||||||||| ||| ||||||||||| |||| ||||| |||||| ||||||||||||||| || |||||| || ||||||||||||| || || |
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| T |
49735514 |
gtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgcagtttttatgctggagcacaacttgttaagaatggcaaaacctcaat |
49735415 |
T |
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| Q |
218 |
gtcaggagtttttcaagtaagtta |
241 |
Q |
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|||| ||||||||||||||||| |
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| T |
49735414 |
atcagatgtttttcaagtaagtta |
49735391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 36287788 - 36287848
Alignment:
| Q |
18 |
agaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtg |
78 |
Q |
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||||||||| || |||||||||| ||||||||||| ||||| || ||||| || ||||||| |
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| T |
36287788 |
agaacagttgcttctttctgtgctgaagagaaggttatggacttgtaccaaaaaaaatgtg |
36287848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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