View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_33 (Length: 324)

Name: NF17092_low_33
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_33
NF17092_low_33
[»] chr8 (10 HSPs)
chr8 (119-318)||(28723242-28723441)
chr8 (119-318)||(28730884-28731083)
chr8 (160-318)||(28707920-28708082)
chr8 (192-300)||(28623715-28623823)
chr8 (195-318)||(28695376-28695499)
chr8 (192-304)||(28628056-28628168)
chr8 (192-296)||(28736575-28736679)
chr8 (1-60)||(28723123-28723183)
chr8 (1-60)||(28730765-28730825)
chr8 (3-59)||(28707773-28707830)
[»] scaffold0591 (1 HSPs)
scaffold0591 (192-304)||(8459-8571)
[»] chr6 (1 HSPs)
chr6 (200-309)||(29648981-29649090)
[»] chr7 (1 HSPs)
chr7 (202-298)||(49106297-49106393)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 28723242 - 28723441
Alignment:
Q  119 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28723242 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 28723341  T
Q  219 aacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaattcttgcttagttctctctgctcctcct 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  28723342 aacccaaaaattacagacacaacattcatatctgatgccactaaatccaactttagttgccaaatccatgaattcttgcttagttctctcttttcctcct 28723441  T

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Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 28730884 - 28731083
Alignment:
Q  119 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730884 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 28730983  T
Q  219 aacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaattcttgcttagttctctctgctcctcct 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  28730984 aacccaaaaattacagacacaacattcatatctgatgccactaaatccaactttagttgccaaatccatgaattcttgcttagttctctcttttcctcct 28731083  T

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Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 160 - 318
Target Start/End: Original strand, 28707920 - 28708082
Alignment:
Q  160 taataaatccacccaaagacaccaaatta----aggacatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatg 255  Q
    ||||| ||||||||||||||||||||  |    || ||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  28707920 taatagatccacccaaagacaccaaagaacactagtacatgttcattacttaaagaactccataacccagaaattacagacacgacattcatatctgatg 28708019  T
Q  256 ccactaaatccaactttaattgccaaatccatgaattcttgcttagttctctctgctcctcct 318  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  28708020 ccactaaatccaactttagttgccaaatccatgaattcttgcttatttctctcttttcctcct 28708082  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 28623715 - 28623823
Alignment:
Q  192 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaat 291  Q
    ||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||| | ||||| |||||||||||| || |||||||||| ||||||    
T  28623715 acatgctctttacttaaagaactccataacccataagttacgaacacaacattcatatcttatgcctctaaatccaactctagttgccaaatcaatgaat 28623814  T
Q  292 tcttgctta 300  Q
    |||||||||    
T  28623815 tcttgctta 28623823  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 28695376 - 28695499
Alignment:
Q  195 tgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaattct 294  Q
    ||||||||||||||||||||||||||||||    ||||  |||||||||||||| |||||||| ||||||||| || || |||||||||| |  ||||||    
T  28695376 tgctctttacttaaagaactccataacccatttgttacgaacacaacattcataattgatgcctctaaatccagctctagttgccaaatcaagaaattct 28695475  T
Q  295 tgcttagttctctctgctcctcct 318  Q
    |||||||||||||||  |||||||    
T  28695476 tgcttagttctctcttttcctcct 28695499  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 28628056 - 28628168
Alignment:
Q  192 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaat 291  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||||| |||||| || | ||||| |||||||||||| || |||||||||| |||||     
T  28628056 acatgctcttcacttaaagaactccataacccaaaagttacgaacacagcattcacatcttatgcctctaaatccaactctagttgccaaatcaatgaac 28628155  T
Q  292 tcttgcttagttc 304  Q
    |||| ||||||||    
T  28628156 tctttcttagttc 28628168  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 28736575 - 28736679
Alignment:
Q  192 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaat 291  Q
    ||||| ||||||||||||||||||||||||  | || ||||||||||| ||| ||||||||||||||||||||||| | ||  | |||||||||||||||    
T  28736575 acatgttctttacttaaagaactccataacgtagaagttacagacacagcatacatatttgatgccactaaatccagcattggtagccaaatccatgaat 28736674  T
Q  292 tcttg 296  Q
    |||||    
T  28736675 tcttg 28736679  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28723123 - 28723183
Alignment:
Q  1 attgtagtaagcaaacaagta-ccctattcgaaagaacttcgatcccatacagcaacacta 60  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28723123 attgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacacta 28723183  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28730765 - 28730825
Alignment:
Q  1 attgtagtaagcaaacaagta-ccctattcgaaagaacttcgatcccatacagcaacacta 60  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28730765 attgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacacta 28730825  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 28707773 - 28707830
Alignment:
Q  3 tgtagtaagcaaacaagta-ccctattcgaaagaacttcgatcccatacagcaacact 59  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||||||| |||| ||||    
T  28707773 tgtaataagcaaacaagtaacccaatttgaaagaacttcgatcccatatagcagcact 28707830  T

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Target: scaffold0591 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 8571 - 8459
Alignment:
Q  192 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaat 291  Q
    |||||||||| ||||||||||||||||||||||||| ||||  |||||||||||| || | |||||| ||||||||||| || |||||||||| |||||     
T  8571 acatgctcttcacttaaagaactccataacccaaaagttacgaacacaacattcacatcttatgccaataaatccaactctagttgccaaatcaatgaac 8472  T
Q  292 tcttgcttagttc 304  Q
    |||||||||||||    
T  8471 tcttgcttagttc 8459  T

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Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 29649090 - 29648981
Alignment:
Q  200 tttacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaattcttgctt 299  Q
    ||||||| ||||||||||||| |||||||||| | |  |||||||||||||||||||||| ||||||| | ||| |||||| ||||||||||||||| ||    
T  29649090 tttacttgaagaactccataatccaaaaattataaatgcaacattcatatttgatgccacgaaatccagcattagttgccatatccatgaattcttgttt 29648991  T
Q  300 agttctctct 309  Q
    ||||||||||    
T  29648990 agttctctct 29648981  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 49106297 - 49106393
Alignment:
Q  202 tacttaaagaactccataacccaaaaattacagacacaacattcatatttgatgccactaaatccaactttaattgccaaatccatgaattcttgct 298  Q
    ||||| ||||||||||||||||||||| ||  |||| ||||||||||| | ||||||||||||||| ||  | |||| |||||||||||||||||||    
T  49106297 tacttgaagaactccataacccaaaaagtatggacataacattcatatctaatgccactaaatccagctccatttgctaaatccatgaattcttgct 49106393  T

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