View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_34 (Length: 321)
Name: NF17092_low_34
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 48435124 - 48434825
Alignment:
| Q |
19 |
gagcaatctgaaatggctgagcaagccaagagacgtgctgaagctgccaggtacatttctataatnnnnnnnt----atatatgcatctgattaaagata |
114 |
Q |
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| T |
48435124 |
gagcaatctgaaatggctgagcaagccaagagacgtgctgaagctgccaggtacatttctataataaaaaaaataaaaaaaatgcatctgattaaagata |
48435025 |
T |
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| Q |
115 |
tggtatttaattttggattagtgtatatatagtaatgcttattttaattttgatcaatatttttccaggctgaaggagctccatacactcaagggtcatg |
214 |
Q |
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| T |
48435024 |
tggtatttaattttggattagtgtatatatagtaatgcttattttaattttgatcaatatttttccaggctgaaagagctccatacactcaagggacatg |
48434925 |
T |
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| Q |
215 |
ttgaatctgtggtgaagttgaagggtcttgacattgatacaattcaacaacactacacactctaaatcaatacaaatatcaatgcatagggggtgtattt |
314 |
Q |
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| T |
48434924 |
ttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacacactctaaatcaatacaaatatcaatgcatagggggtgtattt |
48434825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 53073861 - 53073779
Alignment:
| Q |
190 |
gagctccatacactcaagggtcatgttgaatctgtggtgaagttgaagggtcttgacattgatacaattcaacaacactacac |
272 |
Q |
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| T |
53073861 |
gagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacac |
53073779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 21979242 - 21979152
Alignment:
| Q |
190 |
gagctccatacactcaagggtcatgttgaatctgtggtgaagttgaagggtcttgacattgatacaattcaacaacactacacactctaaa |
280 |
Q |
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| T |
21979242 |
gagctacacacactgaagggacacgttgaatcagttgtcaagttgaagggtcttgacattgataccatgcaacaacactacacagtctaaa |
21979152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 1495256 - 1495179
Alignment:
| Q |
196 |
catacactcaagggtcatgttgaatctgtggtgaagttgaagggtcttgacattgatacaattcaacaacactacaca |
273 |
Q |
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| T |
1495256 |
catactctcaagggacatgtagaatcagtggtgaagctgaagggactagatattgatacaattcagcagcactacaca |
1495179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 3159205 - 3159270
Alignment:
| Q |
199 |
acactcaagggtcatgttgaatctgtggtgaagttgaagggtcttgacattgatacaattcaacaa |
264 |
Q |
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| T |
3159205 |
acactcaagggccatgttgagtcagtggttagactgaagggtcttgacattgacacaatacaacaa |
3159270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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