View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_37 (Length: 315)
Name: NF17092_low_37
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 1496118 - 1496407
Alignment:
| Q |
10 |
attatactaacttgtagatataaagccgccatcatctcatcaggattatgtcttataggcctcacaccaaacttgttctgcaacatatataaagctattc |
109 |
Q |
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| T |
1496118 |
attatactaacttgtagatataaagccgccatcatctcatcaggattatgtcttataggcctcacaccaaacttgttctgcaacatatataaagctattc |
1496217 |
T |
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| Q |
110 |
acacttagaatatcagctagtaggtgataatattgagttaaacgagaaataattaatttaccgaaaagaagttggtatctttcatcacccagaaaaatac |
209 |
Q |
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| T |
1496218 |
acacttagaatatcatctagtaggtgataatattgagttaaacgagaaataattaatttaccgaaaagaagttggtatctttcatcgcccagaaaaatac |
1496317 |
T |
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| Q |
210 |
tactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggttt |
299 |
Q |
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| T |
1496318 |
tactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggttt |
1496407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 1463349 - 1463247
Alignment:
| Q |
197 |
cccagaaaaatactactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatgg |
296 |
Q |
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| T |
1463349 |
cccagaaaaatatgactgtcattagggccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatgg |
1463250 |
T |
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| Q |
297 |
ttt |
299 |
Q |
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| T |
1463249 |
ttt |
1463247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 1463547 - 1463452
Alignment:
| Q |
10 |
attatactaacttgtagatataaagccgccatcatctcatcaggattatgtcttataggcctcacaccaaacttgttctgcaacatatataaagct |
105 |
Q |
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| T |
1463547 |
attatactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagct |
1463452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 50276915 - 50276782
Alignment:
| Q |
167 |
ttaccgaaaagaagttggtatctttcatcacccagaaaaatactactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccct |
266 |
Q |
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| T |
50276915 |
ttaccgagaagaaatcggtatccttcatgagccagaaaaacaccactgtcattagtgccatgtagctacctagcacaacaccagtagcaaatatctctct |
50276816 |
T |
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| Q |
267 |
cagtttccaactatcaggtagtggagatggtttt |
300 |
Q |
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| T |
50276815 |
cagtttccaactgtctggcattggagatggtttt |
50276782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 299
Target Start/End: Complemental strand, 26791144 - 26791005
Alignment:
| Q |
160 |
aattaatttaccgaaaagaagttggtatctttcatcacccagaaaaatactactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaata |
259 |
Q |
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|||| ||||||||| || |||| ||||| ||||| |||||||||||| ||||||||||||||||||||||| || || |||| |||||||||||||| |
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| T |
26791144 |
aattgatttaccgagaaaaagtcagtatcgttcattgcccagaaaaatatgactgtcattagtgccatgtaactgccaagcacaataccagtagcaaata |
26791045 |
T |
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| Q |
260 |
tctccctcagtttccaactatcaggtagtggagatggttt |
299 |
Q |
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| T |
26791044 |
tctccttaagtttccaactatcaggcaatggagatggttt |
26791005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 26791297 - 26791217
Alignment:
| Q |
10 |
attatactaacttgtagatataaagccgccatcatctcatcaggattatgtcttataggcctcacaccaaacttgttctgc |
90 |
Q |
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|||||||| |||||||| || ||||| |||||||||||||||||| ||| ||| | || ||||||||||||| ||| |||| |
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| T |
26791297 |
attatactgacttgtaggtacaaagctgccatcatctcatcaggactatctctcaaagacctcacaccaaacgtgtcctgc |
26791217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 15869852 - 15869743
Alignment:
| Q |
187 |
tctttcatcacccagaaaaatactactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggta |
286 |
Q |
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| T |
15869852 |
tctttcaccacccagaagaatatcacagtcatcattgccaagtaacctccaagcatgacaccagttgcaaatatttctctcagtttccagctatcaggca |
15869753 |
T |
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| Q |
287 |
gtggagatgg |
296 |
Q |
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||||||||| |
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| T |
15869752 |
ttggagatgg |
15869743 |
T |
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