View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_39 (Length: 302)
Name: NF17092_low_39
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 32119129 - 32119398
Alignment:
| Q |
10 |
aagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaatggagaca--accactccatagcagcagcaatgttgaactttggcaaagaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32119129 |
aagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagacataaccattccatagcagcagcaatgttgaactttggcaaagaat |
32119228 |
T |
|
| Q |
108 |
atccattaatcaggttcatatatgttttctgtatccattgcactttcactttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggtaaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
32119229 |
atccattaatcaggttcatatatgttttctgtatccattg------cactttggtaagtagaaccttgcaagacaacaaagaggaagaaagcggtaaaaa |
32119322 |
T |
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| Q |
208 |
agacaagcgacaaattattccaaagttataattattgaaaataactgacaagaaacggaaagaacggaactatgac |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119323 |
agacaagcgacaaattattccaaagttataattattgaaaataactgacaagaaacggaaagaacggaactatgac |
32119398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 14375661 - 14375535
Alignment:
| Q |
10 |
aagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaatggagaca--accactccatagcagcagcaatgttgaactttggcaaagaat |
107 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||| ||||| |
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| T |
14375661 |
aagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaactttggccgagaat |
14375562 |
T |
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| Q |
108 |
atccattaatcaggttcatatatgttt |
134 |
Q |
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| T |
14375561 |
acccatcaatcagtttcatatttgttt |
14375535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 14375120 - 14375032
Alignment:
| Q |
156 |
ctttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggt---aaaaaagacaagcgacaaattattccaaagttataatta |
241 |
Q |
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||||||| ||||||| ||||||||| ||||||||||||||||| | |||||| |||||| ||||| ||||||||||||||||||| |
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| T |
14375120 |
ctttggtcagtagaagcctgcaagacaacaaagaggaagaaagcgataaaaaaaaaaacaagcaacaaagtattccaaagttataatta |
14375032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 41449561 - 41449679
Alignment:
| Q |
10 |
aagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaatggagaca--accactccatagcagcagcaatgttgaactttggcaaagaat |
107 |
Q |
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||||||||||| |||||| |||| |||| |||||||||||||||| ||| || |||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
41449561 |
aagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagcataaccattccatagcagcagcaatattgaactttggccgagaat |
41449660 |
T |
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| Q |
108 |
atccattaatcaggttcat |
126 |
Q |
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| T |
41449661 |
acccatcagtcagtttcat |
41449679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 14238489 - 14238603
Alignment:
| Q |
22 |
gaaaagacaaatctgatcaaagacaacatatctaaatgga--gacaaccactccatagcagcagcaatgttgaactttggcaaagaatatccattaatca |
119 |
Q |
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|||||| ||||| |||| |||||||||||||||| | | || ||||| ||||||||||||| ||||||||| |||||| |||||| |||| | ||| |
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| T |
14238489 |
gaaaaggcaaatatgatggaagacaacatatctaagcgtaaagataaccattccatagcagcagaaatgttgaaatttggccgagaatacccatcagtca |
14238588 |
T |
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| Q |
120 |
ggttcatatatgttt |
134 |
Q |
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| T |
14238589 |
gtttcatatttgttt |
14238603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 10593497 - 10593367
Alignment:
| Q |
10 |
aagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaatggagaca------accactccatagcagcagcaatgttgaactttggcaaa |
103 |
Q |
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||||||||||||| |||| |||| ||||||||||| |||| |||||| || ||| |||| ||| |||||||||||||||| ||||||||| | |
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| T |
10593497 |
aagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccattccgtagcagcagcaatgttcaactttggccga |
10593398 |
T |
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| Q |
104 |
gaatatccattaatcaggttcatatatgttt |
134 |
Q |
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||||| ||||||||||| ||||||| ||||| |
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| T |
10593397 |
gaatacccattaatcagtttcatatttgttt |
10593367 |
T |
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