View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_40 (Length: 299)
Name: NF17092_low_40
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 5334261 - 5333978
Alignment:
| Q |
1 |
aagaaagcctcaaccaaatcaatcaaagacattaaccgccgccgttggcgtcgaaaaactccaataaagaacgtcgtcgcagcttcctccgccgttcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5334261 |
aagaaagcctcaaccaaatcaatcaaagacattaaccgccgccgttggcgtcgaaaaactccgataaagaacgtcgtcgcagcttcctccgccgttcttt |
5334162 |
T |
|
| Q |
101 |
cttccatccaccgccgcatttcaaagcttctcaccaaactgggactcactcgtctcagttcttcaaatcggaaacgaaacagctacaaaatcctcaagaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5334161 |
cttccatccaccgccgcatttcaaagcttctcaccaaactgggactcactcgtctcagttcttcaaatcggaaacgaaacagctacaaaatcctcaagaa |
5334062 |
T |
|
| Q |
201 |
atcagcacatttcaactttcaacaacaagacaccgtttgcaaaaccctgcttttcgaagatagcgtcgaaaattctcttcttcc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5334061 |
atcagcacatttcaactttcaacaacaagacaccgtttgcaaaaccctgcttttcgaagatagcgtcgaaaattctcttcttcc |
5333978 |
T |
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