View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_42 (Length: 272)
Name: NF17092_low_42
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 5433320 - 5433079
Alignment:
| Q |
13 |
aatatacattggtgtgtagtattactttcggnnnnnnnncttcaaaacaaggagacgttttcgtataatattgtcattaaaattatgaaagccatgtctg |
112 |
Q |
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| T |
5433320 |
aatatacattggtgtgtagtattactttcggaaaaaaa-cttcaaaacaaggagacgttttcgtataatattgtcattaaaattatgaaagccatgtctg |
5433222 |
T |
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| Q |
113 |
aaaattttgctgatgtagttcaaagatttaaaatgatactacatcctttcctatttataagctcctttagtatttctcacatatattaagaaacgttaan |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5433221 |
aaaattttgctgatgtagttcaaagatttaaaatgatactacatcctttcctatttataagctcctttagtatttctcacatatattaagaaacgttaat |
5433122 |
T |
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| Q |
213 |
nnnnnnncctttcaaattgtgaggcttataattagggacaaag |
255 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
5433121 |
tttttttcctttcaaatgatgaggcttataattagggacaaag |
5433079 |
T |
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