View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_43 (Length: 266)
Name: NF17092_low_43
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 45405003 - 45404760
Alignment:
| Q |
12 |
atgaagtgtcattcagagaaagaaagagtttctaacagcttggaagatcaagattcatggactaataatgctaaagatgttcaatctgataatgaaatca |
111 |
Q |
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| T |
45405003 |
atgaagtgtcattcagagaaagaaagagtttctaacagcttggaagatcaagattcatggactaatgatgctaaagatgttcaatctgataatgaaatca |
45404904 |
T |
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| Q |
112 |
ctgctccaaataggaagaaaagatcaaagagaacaagaacaaggtataacatggtagctactgcaacagcttcttcttctgtttctgaggttgaacatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45404903 |
ctgctccaaataggaagaaaagatcaaagagaacaagaacaaggtataacatggtagctactgcaacagcttcttcttctgtttctgaggttgaacatga |
45404804 |
T |
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| Q |
212 |
gcaagaagaagttgctatgagcttgattatgcttagtagtgatg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45404803 |
gcaagaagaagttgctatgagcttgattatgcttagtagagatg |
45404760 |
T |
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