View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_44 (Length: 264)
Name: NF17092_low_44
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32812754 - 32812505
Alignment:
| Q |
1 |
ctttaagagatggattgaagatagtaatgacggataaagatggtgacaatataccacgacgatctcaaatgacgtttatcatgaaatattttgtaatgta |
100 |
Q |
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| T |
32812754 |
ctttaagagttggattgaagatagtaatgactgataaagatggtgacaatataccactacgatctcaaatgacgtttatcatgaaatattttgtaatgta |
32812655 |
T |
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| Q |
101 |
taatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatatttatctgactac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32812654 |
taatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatatttatcagactac |
32812555 |
T |
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| Q |
201 |
ttctatcagatactatatatttattttgttataacttattcgtttttgct |
250 |
Q |
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| T |
32812554 |
ttctatcatatactatatatttattttgttataacttattcgtttttgct |
32812505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 776331 - 776579
Alignment:
| Q |
1 |
ctttaagagatggattgaagatagtaatgacggataaagatggtgacaatataccacgacgatctcaaatgacgtttatcatgaaatattttgtaatgta |
100 |
Q |
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| T |
776331 |
ctttaagagatggattgaagatagtaatgactgataaagatggtgacaatataccactacgatctcaaatgacgtttatcatgaaatattttgtaatgta |
776430 |
T |
|
| Q |
101 |
taatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatatttatctgactac |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
776431 |
taatgatga-cataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatacttatcaaactat |
776529 |
T |
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| Q |
201 |
ttctatcagatactatatatttattttgttataacttattcgtttttgct |
250 |
Q |
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| T |
776530 |
ttctatcagatactatatatttattttgttataacatattcgtttttgct |
776579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 5739684 - 5739612
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
137 |
Q |
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| T |
5739684 |
tcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagacta |
5739612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 5776796 - 5776724
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
137 |
Q |
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| T |
5776796 |
tcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagacta |
5776724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 47309343 - 47309410
Alignment:
| Q |
64 |
ctcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataatt |
131 |
Q |
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| T |
47309343 |
ctcaaatgttgtttatcacgaagcattttgtaatgtatgatgatgaacgtaaaaatttaacaataatt |
47309410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 29692772 - 29692702
Alignment:
| Q |
150 |
aatatgttatcattactatataatatccatgtttaatatttatctgactacttctatcagatactatatat |
220 |
Q |
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| T |
29692772 |
aatatgtgatcattgctgtataatatccatgtttaaattttatcatacaacttctattggatactatatat |
29692702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 43784785 - 43784857
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
137 |
Q |
| |
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| T |
43784785 |
tcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacattaacaataactagacta |
43784857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 9794998 - 9795070
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
137 |
Q |
| |
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| T |
9794998 |
tcaaatgtcgtttaccatgaaatatttcgtaacatatgatgataaatgtaaaacgttaacaataactagacta |
9795070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 23761145 - 23761217
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
137 |
Q |
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||||||| |||||| |||||||||||| |||| |||| |||||||| |||||| |||||||||| ||||||| |
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| T |
23761145 |
tcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactagacta |
23761217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 26665952 - 26666021
Alignment:
| Q |
65 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattaga |
134 |
Q |
| |
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||||||| |||| | |||||||||||| |||| |||| |||||||| |||||| |||||||||| |||| |
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| T |
26665952 |
tcaaatgtcgttaaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactaga |
26666021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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