View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_49 (Length: 237)
Name: NF17092_low_49
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 34837465 - 34837277
Alignment:
| Q |
16 |
attttatattctttgaaatagatgacttgtctattaagatcaaatgattaataaacttcattttagaacgaattgtttgagaaaaatcaagtacgatttt |
115 |
Q |
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| T |
34837465 |
attttatattctttgaaatatatgacttgtctattaagatcaaatgattaataaacttcactttagaacgaattgtttgagaaaaatcgagtacaatttt |
34837366 |
T |
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| Q |
116 |
tgagtgaaacaatatttgttctgactttacttacttcccatccaaatttcagattactagagtctatttctttaataatcagatgatta |
204 |
Q |
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| T |
34837365 |
tgagtgaaacaatatttgttctgactttacttacttctcatccaaacttcaaattactagagtctatttctttaataatcaaatgatta |
34837277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 34837275 - 34837184
Alignment:
| Q |
146 |
ttacttcccatccaaatttcagattactagagtctatttctttaataatcagatgattaacaaaagaaaatctaatccaaaacacgaatacc |
237 |
Q |
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| T |
34837275 |
ttacttctcaactaaacttcagattattagagtctatttttttaataaccaaatgattaacaaaagaaaatctaaaccaaaacgcgaatacc |
34837184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 13872248 - 13872299
Alignment:
| Q |
83 |
acgaattgtttgagaaaaatcaagtacgatttttgagtgaaacaatatttgt |
134 |
Q |
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| T |
13872248 |
acgaattatttgggaaaactcaagtacgatttttgggtgaaacaatttttgt |
13872299 |
T |
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