View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_5 (Length: 546)
Name: NF17092_low_5
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 31097886 - 31097359
Alignment:
| Q |
1 |
ttatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgaga |
100 |
Q |
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| T |
31097886 |
ttatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgaga |
31097787 |
T |
|
| Q |
101 |
cggattggttggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatcca |
200 |
Q |
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| T |
31097786 |
cggattggtcggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatcca |
31097687 |
T |
|
| Q |
201 |
catcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatttttatcaagtcagtt |
300 |
Q |
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| T |
31097686 |
catcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatttttatcaagtcagtt |
31097587 |
T |
|
| Q |
301 |
tttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagagttctatatact |
400 |
Q |
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| T |
31097586 |
tttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagagttctatatact |
31097487 |
T |
|
| Q |
401 |
gatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtccacctcattcctc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097486 |
gatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtccacctcattcctc |
31097387 |
T |
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| Q |
501 |
gagctccgtcactctgtacctgttacat |
528 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31097386 |
gagctccgtcactctgtacctgttacat |
31097359 |
T |
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