View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_54 (Length: 203)

Name: NF17092_low_54
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_54
NF17092_low_54
[»] chr4 (29 HSPs)
chr4 (6-203)||(28693824-28694027)
chr4 (104-189)||(25818378-25818463)
chr4 (113-184)||(42375063-42375134)
chr4 (128-203)||(50384134-50384209)
chr4 (113-184)||(23444283-23444354)
chr4 (113-184)||(47661895-47661966)
chr4 (130-203)||(45591441-45591514)
chr4 (128-184)||(6271755-6271811)
chr4 (128-184)||(47404614-47404670)
chr4 (128-184)||(55090025-55090081)
chr4 (113-184)||(51265498-51265569)
chr4 (128-176)||(52028610-52028658)
chr4 (128-191)||(24006099-24006162)
chr4 (101-176)||(47762669-47762744)
chr4 (128-170)||(26186045-26186087)
chr4 (131-176)||(40789240-40789285)
chr4 (116-188)||(35682215-35682287)
chr4 (113-176)||(53954671-53954734)
chr4 (113-153)||(5048884-5048924)
chr4 (128-176)||(31430490-31430538)
chr4 (128-174)||(31532718-31532764)
chr4 (111-161)||(47661854-47661904)
chr4 (128-161)||(40789208-40789241)
chr4 (128-161)||(55090072-55090105)
chr4 (113-161)||(3862622-3862670)
chr4 (113-161)||(3871379-3871427)
chr4 (113-161)||(23444345-23444393)
chr4 (148-184)||(30861823-30861859)
chr4 (113-161)||(51265459-51265507)
[»] chr5 (23 HSPs)
chr5 (113-203)||(2953224-2953314)
chr5 (113-189)||(2093951-2094027)
chr5 (113-184)||(291150-291221)
chr5 (113-184)||(3899892-3899963)
chr5 (113-184)||(16971197-16971268)
chr5 (113-184)||(29699420-29699491)
chr5 (128-184)||(3180089-3180145)
chr5 (128-184)||(16439191-16439247)
chr5 (113-172)||(12913868-12913927)
chr5 (117-176)||(19655219-19655278)
chr5 (113-184)||(30117842-30117913)
chr5 (128-174)||(28818980-28819026)
chr5 (113-182)||(26662454-26662524)
chr5 (113-182)||(26934049-26934119)
chr5 (116-153)||(7137748-7137785)
chr5 (131-184)||(38134405-38134458)
chr5 (104-164)||(7009401-7009461)
chr5 (113-161)||(19655172-19655220)
chr5 (116-155)||(13312281-13312320)
chr5 (111-161)||(29699379-29699429)
chr5 (128-181)||(11983284-11983337)
chr5 (128-161)||(16439167-16439200)
chr5 (128-176)||(16802505-16802553)
[»] scaffold0180 (1 HSPs)
scaffold0180 (113-203)||(19136-19226)
[»] chr2 (20 HSPs)
chr2 (116-184)||(14229370-14229438)
chr2 (131-189)||(6721999-6722057)
chr2 (113-187)||(16514474-16514548)
chr2 (113-176)||(6217238-6217301)
chr2 (113-184)||(38933640-38933711)
chr2 (128-184)||(2828637-2828693)
chr2 (128-184)||(2894016-2894072)
chr2 (128-176)||(15011341-15011389)
chr2 (113-184)||(29508704-29508776)
chr2 (113-176)||(14470606-14470669)
chr2 (128-187)||(37961756-37961815)
chr2 (113-162)||(33018620-33018669)
chr2 (128-189)||(37762030-37762091)
chr2 (113-176)||(29925584-29925647)
chr2 (128-166)||(14464584-14464622)
chr2 (111-161)||(15011292-15011342)
chr2 (117-179)||(32545846-32545908)
chr2 (131-176)||(8534207-8534252)
chr2 (113-174)||(14892323-14892384)
chr2 (131-176)||(24115981-24116026)
[»] chr1 (31 HSPs)
chr1 (128-188)||(47303444-47303504)
chr1 (128-176)||(8337880-8337928)
chr1 (113-184)||(32540762-32540833)
chr1 (113-184)||(48993931-48994002)
chr1 (127-189)||(45728335-45728397)
chr1 (128-176)||(4609057-4609105)
chr1 (128-184)||(34062262-34062318)
chr1 (128-184)||(48604976-48605032)
chr1 (128-183)||(1819518-1819573)
chr1 (113-184)||(15220864-15220935)
chr1 (113-184)||(29179611-29179682)
chr1 (128-184)||(741531-741587)
chr1 (128-184)||(17127593-17127649)
chr1 (128-184)||(37155099-37155155)
chr1 (128-184)||(46333975-46334031)
chr1 (113-184)||(5995422-5995493)
chr1 (128-203)||(28928808-28928883)
chr1 (113-184)||(33219626-33219697)
chr1 (128-184)||(9157363-9157419)
chr1 (116-176)||(29371429-29371489)
chr1 (137-176)||(1091582-1091621)
chr1 (128-184)||(44706812-44706869)
chr1 (113-161)||(46932011-46932059)
chr1 (113-184)||(49444927-49444996)
chr1 (131-170)||(38674537-38674576)
chr1 (128-161)||(29371397-29371430)
chr1 (116-161)||(37155063-37155108)
chr1 (128-176)||(5694919-5694966)
chr1 (113-161)||(21630056-21630104)
chr1 (113-161)||(29179673-29179721)
chr1 (128-176)||(48498476-48498524)
[»] chr8 (20 HSPs)
chr8 (113-188)||(10086806-10086881)
chr8 (113-184)||(5033214-5033285)
chr8 (113-184)||(35440983-35441054)
chr8 (128-184)||(34229694-34229750)
chr8 (113-184)||(33841605-33841676)
chr8 (128-184)||(8243417-8243473)
chr8 (128-203)||(31159885-31159960)
chr8 (128-188)||(6296654-6296714)
chr8 (128-184)||(34541832-34541888)
chr8 (118-184)||(5667150-5667216)
chr8 (128-174)||(35031643-35031689)
chr8 (128-184)||(8796475-8796531)
chr8 (113-161)||(10086771-10086819)
chr8 (113-160)||(5667111-5667158)
chr8 (113-161)||(2581839-2581887)
chr8 (117-161)||(4958617-4958661)
chr8 (128-188)||(4958648-4958707)
chr8 (113-161)||(8243464-8243512)
chr8 (113-161)||(35441045-35441093)
chr8 (128-176)||(45191156-45191204)
[»] chr7 (21 HSPs)
chr7 (113-184)||(11016922-11016993)
chr7 (113-176)||(4290606-4290669)
chr7 (113-184)||(42628348-42628419)
chr7 (113-174)||(48000708-48000769)
chr7 (128-184)||(41018257-41018313)
chr7 (113-176)||(48000798-48000861)
chr7 (118-176)||(15027603-15027661)
chr7 (128-172)||(4649387-4649431)
chr7 (113-161)||(34854771-34854819)
chr7 (116-184)||(38975858-38975926)
chr7 (129-176)||(27028823-27028870)
chr7 (111-161)||(27028869-27028919)
chr7 (128-176)||(7671940-7671988)
chr7 (128-176)||(29053343-29053391)
chr7 (128-176)||(34854724-34854772)
chr7 (103-161)||(22764776-22764834)
chr7 (131-168)||(41945924-41945961)
chr7 (113-161)||(11016883-11016931)
chr7 (117-161)||(27028746-27028790)
chr7 (113-161)||(38975819-38975867)
chr7 (156-184)||(45231907-45231935)
[»] chr6 (11 HSPs)
chr6 (128-184)||(551194-551250)
chr6 (128-187)||(2315333-2315392)
chr6 (113-184)||(12343153-12343224)
chr6 (128-188)||(10521878-10521938)
chr6 (113-184)||(24618615-24618686)
chr6 (113-170)||(17750969-17751026)
chr6 (128-184)||(13043510-13043566)
chr6 (118-160)||(17750921-17750963)
chr6 (113-161)||(24587475-24587523)
chr6 (113-162)||(24975766-24975815)
chr6 (140-184)||(24587514-24587558)
[»] scaffold0016 (1 HSPs)
scaffold0016 (113-184)||(49717-49788)
[»] chr3 (26 HSPs)
chr3 (113-184)||(47492061-47492132)
chr3 (128-187)||(51046102-51046161)
chr3 (131-189)||(49418723-49418781)
chr3 (128-184)||(30476503-30476559)
chr3 (128-184)||(33689229-33689285)
chr3 (113-176)||(1801460-1801523)
chr3 (131-176)||(29031746-29031791)
chr3 (116-188)||(30734419-30734491)
chr3 (135-203)||(34060219-34060287)
chr3 (128-184)||(43139738-43139794)
chr3 (128-184)||(50550028-50550084)
chr3 (110-184)||(30904297-30904371)
chr3 (113-170)||(45103123-45103180)
chr3 (131-176)||(55223293-55223338)
chr3 (113-161)||(33689190-33689238)
chr3 (117-176)||(41753025-41753084)
chr3 (113-182)||(30580770-30580839)
chr3 (139-176)||(47677295-47677332)
chr3 (113-161)||(18321665-18321713)
chr3 (128-176)||(18321712-18321760)
chr3 (113-161)||(41752978-41753026)
chr3 (117-176)||(50524763-50524822)
chr3 (128-170)||(21024123-21024165)
chr3 (128-161)||(30476550-30476583)
chr3 (128-161)||(47677331-47677364)
chr3 (113-161)||(30580832-30580880)
[»] scaffold1033 (1 HSPs)
scaffold1033 (127-184)||(2266-2323)
[»] scaffold1029 (1 HSPs)
scaffold1029 (127-184)||(2266-2323)
[»] scaffold0586 (2 HSPs)
scaffold0586 (113-184)||(7061-7132)
scaffold0586 (116-161)||(7123-7168)
[»] scaffold0047 (1 HSPs)
scaffold0047 (128-176)||(63818-63866)
[»] scaffold0481 (1 HSPs)
scaffold0481 (137-176)||(2925-2964)
[»] scaffold0161 (1 HSPs)
scaffold0161 (113-184)||(27234-27305)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 28693824 - 28694027
Alignment:
Q  6 aggagcagagattggattcaaattagctccatgtaagtaggaacaagtgagttagaatatggtagtttgttgatacctgaggtgatggtgcatgaggtgg 105  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  28693824 aggagcacatattggattcaaattagatccatgtaagtaggaacaagtgagttagaatatggtagtttgttgattcgtgaggtgatggtgcatgaggtgg 28693923  T
Q  106 atatcacttgggtgaca------ttgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatat 199  Q
    ||| |||||||||||||      | || |||||||  |||||||||| ||||||||||||||||||||||||||||| || ||||||||||  ||||| |    
T  28693924 atagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacattatgattcgccaatgt 28694023  T
Q  200 cacc 203  Q
    ||||    
T  28694024 cacc 28694027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 25818378 - 25818463
Alignment:
Q  104 ggatatcacttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||    
T  25818378 ggataacacttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtgat 25818463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 42375134 - 42375063
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  42375134 ttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 42375063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 50384134 - 50384209
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| |||||    
T  50384134 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgattgacgaatgtcacc 50384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 23444283 - 23444354
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  23444283 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 23444354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 47661966 - 47661895
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  47661966 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 47661895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 45591441 - 45591514
Alignment:
Q  130 cattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||| || |||| |||||||||||| |||||    
T  45591441 cattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgattgaccaatgtcacc 45591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 6271811 - 6271755
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  6271811 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 6271755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 47404614 - 47404670
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  47404614 gacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcatt 47404670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 55090025 - 55090081
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  55090025 gacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcatt 55090081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 51265569 - 51265498
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  |||||| |||||||||||| |||||||||||||||||||| |||||||    
T  51265569 ttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcatt 51265498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 52028658 - 52028610
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  52028658 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 52028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 24006099 - 24006162
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattg 191  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||| || |||| ||||||    
T  24006099 gacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgtgattg 24006162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 47762744 - 47762669
Alignment:
Q  101 ggtggatatcacttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| || |||| ||| ||||  |||||||||||| || |||||||||||| ||||||||||||||||||||    
T  47762744 ggtggatagcagttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaaca 47762669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 26186045 - 26186087
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagaga 170  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  26186045 gacattggtcaatcacaatgtcacaatgcttgtgaaagagaga 26186087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 40789285 - 40789240
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40789285 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 40789240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 35682287 - 35682215
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    ||||||||||  |||||||  | ||||||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  35682287 ggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatga 35682215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 53954734 - 53954671
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||  |||| |||||||||||||| ||||||||||| ||||||||    
T  53954734 ttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaaca 53954671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 5048924 - 5048884
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaa 153  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  5048924 ttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 31430490 - 31430538
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||  ||||||||||||||||||| || |||||||||||||||||    
T  31430490 gacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaaca 31430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 31532718 - 31532764
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 174  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  31532718 gacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaa 31532764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 47661854 - 47661904
Alignment:
Q  111 acttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  47661854 acttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 47661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 40789208 - 40789241
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||| |||||||||||||||||||||||||    
T  40789208 gacattggccaatcacaatgtcacaatgtttgtg 40789241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 55090105 - 55090072
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||||||||||||||| |||||    
T  55090105 gacattggtcaatcacaatgtcacaatgcttgtg 55090072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 3862670 - 3862622
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  3862670 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 3862622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 3871427 - 3871379
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  3871427 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 3871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 23444393 - 23444345
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  23444393 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 23444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 30861823 - 30861859
Alignment:
Q  148 tcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| |||||||||||||||||||| |||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcatt 30861859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 51265459 - 51265507
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  51265459 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 51265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 2953314 - 2953224
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  2953314 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgattgaccaatgtcacc 2953224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 2093951 - 2094027
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    |||||||| ||||  ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  2093951 ttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgat 2094027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 291221 - 291150
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||    
T  291221 ttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcatt 291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 3899963 - 3899892
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  3899963 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 3899892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 16971268 - 16971197
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  16971268 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 16971197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 29699491 - 29699420
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||  |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  29699491 ttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 29699420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 3180089 - 3180145
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  3180089 gacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcatt 3180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 16439247 - 16439191
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  16439247 gacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 16439191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 12913927 - 12913868
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagaga 172  Q
    |||||||||||||  || |||||||||||||||||||| |||| ||||||||||||||||    
T  12913927 ttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagaga 12913868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 19655278 - 19655219
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||  |||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  19655278 gtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 19655219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 30117842 - 30117913
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  || ||||  |||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  30117842 ttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcatt 30117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 28819026 - 28818980
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 174  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28819026 gacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaa 28818980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 26662524 - 26662454
Alignment:
Q  113 ttgggtgacattgacgacattggtcaa-tcacaatgtcacaatgtttgtgaaagagagagaaacaaaagca 182  Q
    |||||||| ||||  |||||||||||| |||||||||||||||  |||||||| ||||||||||| |||||    
T  26662524 ttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagca 26662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 26934119 - 26934049
Alignment:
Q  113 ttgggtgacattgacgacattggtcaa-tcacaatgtcacaatgtttgtgaaagagagagaaacaaaagca 182  Q
    |||||||| ||||  |||||||||||| |||||||||||||||  |||||||| ||||||||||| |||||    
T  26934119 ttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagca 26934049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 7137785 - 7137748
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaa 153  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7137785 ggtgacattgacgacattggtcaaccacaatgtcacaa 7137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 38134405 - 38134458
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||| ||||||||||||||||||| | |||||||||| ||||||| |||||||    
T  38134405 attggccaatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcatt 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 7009461 - 7009401
Alignment:
Q  104 ggatatcacttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaa 164  Q
    ||||| ||||||| ||||||||  || |||||||||||||||| |||||||| ||||||||    
T  7009461 ggatagcacttggatgacattggtgatattggtcaatcacaatatcacaatgcttgtgaaa 7009401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 19655172 - 19655220
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||||    
T  19655172 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 19655220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 13312281 - 13312320
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatg 155  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  13312281 ggtgacattgatgacattgatcaatcacaatgtcacaatg 13312320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 29699379 - 29699429
Alignment:
Q  111 acttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  29699379 acttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 29699429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 11983284 - 11983337
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagc 181  Q
    ||||||||||||||| ||||||||||| |||| || ||||||||| | ||||||    
T  11983284 gacattggtcaatcaaaatgtcacaatctttgagagagagagagagataaaagc 11983337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 16439167 - 16439200
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||||||||||||||| |||||    
T  16439167 gacattggtcaatcacaatgtcacaatgcttgtg 16439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 16802553 - 16802505
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||  |||||| |||||||||||| |||| |||||||||||||||    
T  16802553 gacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaaca 16802505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 19136 - 19226
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||| |||| ||||||||| || |||||||||||| ||||||||||    
T  19136 ttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacattatgattgatcaatatcacc 19226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 14229370 - 14229438
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  14229370 ggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 14229438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 6722057 - 6721999
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6722057 attggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgat 6721999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 16514548 - 16514474
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatg 187  Q
    |||||||| ||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  16514548 ttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatg 16514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 6217238 - 6217301
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  6217238 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaaca 6217301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 38933711 - 38933640
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  ||| |||| |||||| |||||||||||| |||||||||||||||||||| |||||||    
T  38933711 ttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcatt 38933640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 2828693 - 2828637
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||    
T  2828693 gacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcatt 2828637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 2894072 - 2894016
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||    
T  2894072 gacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcatt 2894016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 15011389 - 15011341
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15011389 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 15011341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 29508704 - 29508776
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaa-tgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||| || ||||||| |||||||||||||||||||| |||||||    
T  29508704 ttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcatt 29508776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 14470606 - 14470669
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||  ||||||||||||  ||||| ||||||||||||||||||||    
T  14470606 ttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaaca 14470669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 37961815 - 37961756
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatg 187  Q
    |||||||  ||||||||||| ||||||| |||||||||||||||||||| || |||||||    
T  37961815 gacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatg 37961756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 33018669 - 33018620
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtga 162  Q
    |||||||||||||  || ||||||||||||||||||||||||| ||||||    
T  33018669 ttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgtga 33018620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 37762030 - 37762091
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    |||||||  ||||||||||||| ||||| |||||||||||| ||||||| ||||||| ||||    
T  37762030 gacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgat 37762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 29925584 - 29925647
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||  |||||||| |  ||||||||||| |||| ||||||||||||||||||||    
T  29925584 ttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaaca 29925647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 14464584 - 14464622
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaaga 166  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  14464584 gacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 15011292 - 15011342
Alignment:
Q  111 acttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||  || ||||| ||||||||||| |||||||||||||    
T  15011292 acttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtg 15011342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 32545908 - 32545846
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaa 179  Q
    |||||||||  |||||||| |||||| |||||||||||| || ||||||||||| ||| ||||    
T  32545908 gtgacattggtgacattggccaatcataatgtcacaatgcttatgaaagagagataaaaaaaa 32545846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 8534252 - 8534207
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||| |||||||||||||  |||||||| |||||||||||    
T  8534252 attggtcaattacaatgtcacaattcttgtgaaatagagagaaaca 8534207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 14892384 - 14892323
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 174  Q
    |||| ||||||||  ||||||| ||||||||||||| |||||  || |||||||||||||||    
T  14892384 ttggatgacattggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaa 14892323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 24116026 - 24115981
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  24116026 attggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaaca 24115981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 47303504 - 47303444
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  47303504 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatga 47303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 8337880 - 8337928
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8337880 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 8337928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 32540762 - 32540833
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  | |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  32540762 ttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 32540833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 48993931 - 48994002
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  48993931 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 48994002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 45728397 - 45728335
Alignment:
Q  127 cgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||    
T  45728397 cgacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgat 45728335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 4609105 - 4609057
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4609105 gacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaaca 4609057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 34062318 - 34062262
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  34062318 gacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcatt 34062262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 48604976 - 48605032
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  48604976 gacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcatt 48605032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 1819518 - 1819573
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcat 183  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  1819518 gacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcat 1819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 15220935 - 15220864
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  || ||||| |||||||||| |||||||| |||||||||||||||||||| |||||||    
T  15220935 ttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcatt 15220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 29179611 - 29179682
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||| ||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  29179611 ttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 29179682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 741531 - 741587
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  741531 gacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 741587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 17127593 - 17127649
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  17127593 gacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 17127649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 37155155 - 37155099
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||    
T  37155155 gacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 37155099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 46333975 - 46334031
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  46333975 gacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcatt 46334031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 5995493 - 5995422
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||| ||||||||  |||||||  ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  5995493 ttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 5995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 28928808 - 28928883
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||||| |||||||||||||||| || |||||||||||||||||||| || || | |||||| ||||| |||||    
T  28928808 gacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaaacactgtgattggccaatgtcacc 28928883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 33219697 - 33219626
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||| ||||||||  ||||||| ||||||||||||||| |||| |||||||||||||| ||||| |||||||    
T  33219697 ttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcatt 33219626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 9157419 - 9157363
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||| ||||||||||| |||||||| ||| |||||||||||||||| |||||||    
T  9157419 gacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcatt 9157363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 29371489 - 29371429
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||  || ||||  ||||||||||||||||||| ||||||||||||||||||||    
T  29371489 ggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 29371429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 1091582 - 1091621
Alignment:
Q  137 caatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaaca 1091621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 44706812 - 44706869
Alignment:
Q  128 gacattggtcaatcacaa-tgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||| || ||||||| |||||||||||||||||||| |||||||    
T  44706812 gacattggccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcatt 44706869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 46932011 - 46932059
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||||    
T  46932011 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 46932059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 49444927 - 49444996
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  ||||| | ||||||||||||| |||||| |||||  ||||||||||||| |||||||    
T  49444927 ttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtg--agagagagaaacacaagcatt 49444996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 38674537 - 38674576
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagaga 170  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  38674537 attggccaatcacaatgtcacaatgcttgtgaaagagaga 38674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 29371397 - 29371430
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||| |||||||||||||||||||||||||    
T  29371397 gacattggccaatcacaatgtcacaatgtttgtg 29371430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 37155063 - 37155108
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||  |||||||| ||||||||||||||||||| |||||    
T  37155063 ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 37155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 5694919 - 5694966
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  5694919 gacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaaca 5694966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 21630056 - 21630104
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||    
T  21630056 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 21630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 29179721 - 29179673
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  29179721 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 29179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 48498524 - 48498476
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||  |||||||||||| || ||| ||||||||||||||||||||    
T  48498524 gacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaaca 48498476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 10086881 - 10086806
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  10086881 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatga 10086806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 5033285 - 5033214
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  5033285 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 5033214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 35440983 - 35441054
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  35440983 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 35441054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 34229750 - 34229694
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  34229750 gacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcatt 34229694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 33841605 - 33841676
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  |||||||| |||||||||| |||||||||||||||||||| |||||||    
T  33841605 ttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcatt 33841676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 8243417 - 8243473
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  8243417 gacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 8243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 31159960 - 31159885
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||| | |||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||| |||| |||||    
T  31159960 gacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattgtgattgatcaatgtcacc 31159885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 6296714 - 6296654
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    |||||| |||||| | |||||||||||  |||||||||||||||||||| |||||||||||    
T  6296714 gacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatga 6296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 34541832 - 34541888
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| |||||| ||| |||||||| |||||||||||||||||||| |||||||    
T  34541832 gacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcatt 34541888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 5667216 - 5667150
Alignment:
Q  118 tgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||  |||||||| |||| ||||||||| |||| |||||||||||||||||| | |||||||    
T  5667216 tgacattggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcatt 5667150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 35031643 - 35031689
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 174  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  35031643 gacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 8796531 - 8796475
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||  |||||| |||||||||||| |||||||||| ||||||||| |||||||    
T  8796531 gacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcatt 8796475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 10086771 - 10086819
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||||   ||||||||||||||||||||||| ||||||||||    
T  10086771 ttgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtg 10086819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 5667111 - 5667158
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgt 160  Q
    |||| ||||||||  |||||||||||||||||||||||||||| ||||    
T  5667111 ttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgt 5667158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 2581839 - 2581887
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  2581839 ttgggtgacattgttgacattggccaatcacaatgccacaatgcttgtg 2581887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 4958617 - 4958661
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||||    
T  4958617 gtgatattgatgacattggccaatcacaatgtcataatgtttgtg 4958661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 4958707 - 4958648
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    |||||||  ||||||||| ||||||||  |||||||||||||||||||| || ||||||||    
T  4958707 gacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatga 4958648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 8243512 - 8243464
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  ||| |||||||||||||||| ||||||| |||||    
T  8243512 ttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtg 8243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 35441093 - 35441045
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  35441093 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 35441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 45191156 - 45191204
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||| | |||||||||| ||||||| || |||||||||||||||||    
T  45191156 gacattgattaatcacaatgccacaatgcttatgaaagagagagaaaca 45191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 11016993 - 11016922
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  11016993 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcatt 11016922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 4290669 - 4290606
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  4290669 ttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaaca 4290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 42628419 - 42628348
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  || ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  42628419 ttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcatt 42628348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 48000708 - 48000769
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 174  Q
    |||||||||||||  ||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  48000708 ttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 41018257 - 41018313
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  41018257 gacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcatt 41018313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 48000861 - 48000798
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  48000861 ttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaaca 48000798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 15027661 - 15027603
Alignment:
Q  118 tgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||  |||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 15027603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 4649431 - 4649387
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagaga 172  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  4649431 gacattggtcaatcacaatgtcacgatgcttgtgaaagagagaga 4649387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 34854819 - 34854771
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  34854819 ttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtg 34854771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 38975926 - 38975858
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||  ||||||| ||||| | |||| ||||||| |||||||||||||||||||| |||||||    
T  38975926 ggtgacattggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcatt 38975858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 27028823 - 27028870
Alignment:
Q  129 acattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  27028823 acattggacaatcacaatgtcacaatgcttctgaaagagagagaaaca 27028870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 27028919 - 27028869
Alignment:
Q  111 acttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||  |||  ||||||||||||||||||||||||||||||||||    
T  27028919 acttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtg 27028869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 7671940 - 7671988
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||| | ||||||||||| ||||||| ||||||||||||||||||||    
T  7671940 gacattagccaatcacaatgccacaatgcttgtgaaagagagagaaaca 7671988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 29053343 - 29053391
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  29053343 gacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaaca 29053391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 34854724 - 34854772
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  34854724 gacattggccaatcacaatgccacaatgcttgtgaaagagatagaaaca 34854772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 22764834 - 22764776
Alignment:
Q  103 tggatatcacttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||| |||||  |||||||||  || ||||| |||||||||||||||||||||||||    
T  22764834 tggatagcacttatgtgacattggtgatattggccaatcacaatgtcacaatgtttgtg 22764776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 41945961 - 41945924
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagaga 168  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  41945961 attggtcaatcacaatgttacaatgcttgtgaaagaga 41945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 11016883 - 11016931
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| |||||    
T  11016883 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 11016931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 27028746 - 27028790
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||  |||||||| ||||||||||||||||||| |||||    
T  27028746 gtgacattggtgacattggacaatcacaatgtcacaatgcttgtg 27028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 38975819 - 38975867
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||   ||||||||||||||||||| ||||||| |||||    
T  38975819 ttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtg 38975867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 45231907 - 45231935
Alignment:
Q  156 tttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||||||||||||||||||    
T  45231907 tttgtgaaagagagagaaacaaaagcatt 45231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 551194 - 551250
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  551194 gacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcatt 551250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 2315333 - 2315392
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatg 187  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  2315333 gacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatg 2315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 12343224 - 12343153
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||  |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  12343224 ttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 12343153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 10521878 - 10521938
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||||    
T  10521878 gacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatga 10521938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 24618615 - 24618686
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  ||||||| ||||||||||||||| |||| || ||||||||||||||||| |||||||    
T  24618615 ttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcatt 24618686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 17751026 - 17750969
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagaga 170  Q
    |||||||| ||||| |||||||| | ||||||||||||||||| ||||||||||||||    
T  17751026 ttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtgaaagagaga 17750969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 13043566 - 13043510
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||||| |||||||    
T  13043566 gacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcatt 13043510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 17750921 - 17750963
Alignment:
Q  118 tgacattgacgacattggtcaatcacaatgtcacaatgtttgt 160  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  17750921 tgacattggtgacattggtcaatcacaatgtcacaatgtttgt 17750963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 24587475 - 24587523
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||||   |||||||||||||||||||||||||||| |||||    
T  24587475 ttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 24975766 - 24975815
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtga 162  Q
    |||| ||||||||  |||||||||||||||||||| ||||||| ||||||    
T  24975766 ttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtga 24975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 24587558 - 24587514
Alignment:
Q  140 tcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||||| |||||||| || |||||||| |||||||    
T  24587558 tcacaatgtcacaatgcttgtgaaaaagcgagaaacacaagcatt 24587514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 49717 - 49788
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||| |||||||  ||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  49717 ttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcatt 49788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 47492061 - 47492132
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcatt 47492132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 51046102 - 51046161
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatg 187  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  51046102 gacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatg 51046161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 49418723 - 49418781
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgat 189  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  49418723 attggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgat 49418781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 30476503 - 30476559
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  30476503 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 30476559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 33689285 - 33689229
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  33689285 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 33689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 1801460 - 1801523
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  1801460 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaaca 1801523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 29031746 - 29031791
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  29031746 attggtcaatcacaatgtcacaatgcttgtgaaagagagagaaaca 29031791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 30734419 - 30734491
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatga 188  Q
    ||||||||||| |||||||  | ||||||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  30734419 ggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatga 30734491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 34060287 - 34060219
Alignment:
Q  135 gtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcattatgattgaccaatatcacc 203  Q
    |||||||||||| |||||||  || ||||||||||| ||||| || |||||||||||||||||||||||    
T  34060287 gtcaatcacaatatcacaatacttatgaaagagagaaaaacacaaacattatgattgaccaatatcacc 34060219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 43139738 - 43139794
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  43139738 gacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcatt 43139794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 50550084 - 50550028
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  50550084 gacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcatt 50550028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 30904371 - 30904297
Alignment:
Q  110 cacttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||| || ||||||  ||||||||||| ||||||| ||| | ||||||||||||||| |||||||    
T  30904371 cacttgggtgacatcgatgacattaatcaatcacaatatcacaatatttataaaagagagagaaacacaagcatt 30904297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 45103123 - 45103180
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagaga 170  Q
    |||||||||||||  || |||| |||||||||||||||||||| ||||||||||||||    
T  45103123 ttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 55223338 - 55223293
Alignment:
Q  131 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||    
T  55223338 attggtcaatcataatgtcacaatgcttgtgaaagagagagaaaca 55223293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 33689190 - 33689238
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||| || ||||||||||||||||||||||||| |||||    
T  33689190 ttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtg 33689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 41753084 - 41753025
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||  |||||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  41753084 gtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaaca 41753025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 30580770 - 30580839
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagca 182  Q
    |||||||||||||  || ||||  |||||| ||||||||||| ||||||||||||| ||||||| |||||    
T  30580770 ttgggtgacattggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagca 30580839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 47677295 - 47677332
Alignment:
Q  139 atcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  47677295 atcacaatgtcacaatgcttgtgaaagagagagaaaca 47677332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 18321665 - 18321713
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||| ||||  |||||||||||||||||||||||||| |||||||    
T  18321665 ttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtg 18321713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 18321760 - 18321712
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||||||||||||  ||||||| ||||| |||||    
T  18321760 gacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaaca 18321712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 41752978 - 41753026
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||||    
T  41752978 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 41753026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 50524822 - 50524763
Alignment:
Q  117 gtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||||  || ||| |||||||||||||| || ||| ||||||||||||||||||||    
T  50524822 gtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaaca 50524763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 21024123 - 21024165
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagaga 170  Q
    |||||||||||| ||||||||||||||  ||||||||||||||    
T  21024123 gacattggtcaaacacaatgtcacaattcttgtgaaagagaga 21024165  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 30476583 - 30476550
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    |||||||||||||||||||||||||||| |||||    
T  30476583 gacattggtcaatcacaatgtcacaatgcttgtg 30476550  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 47677364 - 47677331
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||| ||||||||||||||||||||||||||    
T  47677364 gacattgatcaatcacaatgtcacaatgtttgtg 47677331  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 30580880 - 30580832
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||||   ||||||||||||||||||||||||| || |||||    
T  30580880 ttgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtg 30580832  T

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Target: scaffold1033 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 2323 - 2266
Alignment:
Q  127 cgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2323 cgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

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Target: scaffold1029 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 2323 - 2266
Alignment:
Q  127 cgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2323 cgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

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Target: scaffold0586 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 7061 - 7132
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    |||||||||||||  || ||| | ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  7061 ttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 7132  T

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Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 7168 - 7123
Alignment:
Q  116 ggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtg 161  Q
    ||||||||||  |||||||| ||||||||||||||||||| |||||    
T  7168 ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 7123  T

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Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 63866 - 63818
Alignment:
Q  128 gacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  63866 gacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaaca 63818  T

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Target: scaffold0481 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 2925 - 2964
Alignment:
Q  137 caatcacaatgtcacaatgtttgtgaaagagagagaaaca 176  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2925 caatcacaatgtcacaatgtttgtgaaagagagagaaaca 2964  T

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Target: scaffold0161 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 27234 - 27305
Alignment:
Q  113 ttgggtgacattgacgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacaaaagcatt 184  Q
    ||||||||||||   || ||||| |||||||||||||| |||  |||||||||||||||||||| |||||||    
T  27234 ttgggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcatt 27305  T

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