View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_6 (Length: 515)
Name: NF17092_low_6
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 36605905 - 36605754
Alignment:
| Q |
4 |
cgactgaaatgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatt |
103 |
Q |
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| T |
36605905 |
cgactgaactgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatt |
36605806 |
T |
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| Q |
104 |
tactctattcaattcccaatatatatgtattttaactacctatattaacatg |
155 |
Q |
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| T |
36605805 |
tactctattcaatttacagtatatatgtattttaactacctacattaacatg |
36605754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 32649635 - 32649746
Alignment:
| Q |
8 |
tgaaatgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaa-ttttcccccatttgcctatattaatttac |
106 |
Q |
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|||| ||||| ||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |
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| T |
32649635 |
tgaactgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaatttttcccacatttgcctatattaattaac |
32649733 |
T |
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| Q |
107 |
tctattcaattcc |
119 |
Q |
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||| ||| ||||| |
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| T |
32649734 |
tctcttccattcc |
32649746 |
T |
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