View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_7 (Length: 507)
Name: NF17092_low_7
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 289 - 492
Target Start/End: Complemental strand, 2158858 - 2158655
Alignment:
| Q |
289 |
tggtgcagtggaagagggaagagggaagaggatgggatcgcgaaagtttgcagagaaagagggagatctgaactctttaaggtggggtcatgaattcttc |
388 |
Q |
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| T |
2158858 |
tggtgcagtggaagagagaagagggaagaggatgggatcgcgaaagtttgcagagaaagagggagatctgaactctttaaggtggggtcatgaattcttc |
2158759 |
T |
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| Q |
389 |
actggtgaatttgtatgtgagtgtagaattgggttttaacttgtttggccttaactttgttcttggtgtgaatcattgtgtatctgttaagagatgttag |
488 |
Q |
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| T |
2158758 |
actggtgaatttgtatgtgagtgtagaattgggttttaacttgtttggccttaactttgttcttggtgtgaatcattgtgtatctgttaagagatgttag |
2158659 |
T |
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| Q |
489 |
aatt |
492 |
Q |
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|||| |
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| T |
2158658 |
aatt |
2158655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 2159197 - 2159049
Alignment:
| Q |
18 |
actttagaggtacctttctaattcaaatgtagaaatttcataattgtgcaaggttttgataaatcaatatcatacggtacaacatatgcttccatgtcag |
117 |
Q |
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| T |
2159197 |
actttagaggtacctttccaattcgaatgtagaaatttcataattgtgcaaggttttgataaatcaatatcatacggtacaacatatgcttccatgtcag |
2159098 |
T |
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| Q |
118 |
catcaaccaaaattctagcttgactttctataaatttgagtatcttaaa |
166 |
Q |
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| T |
2159097 |
catcaaccaaaattctagcttgactttctataaatttgagtatcttaaa |
2159049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 162 - 296
Target Start/End: Complemental strand, 2159029 - 2158895
Alignment:
| Q |
162 |
ttaaaaaacaattgttcctgatagaattcaattgtgaatcattatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaattgagtgg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2159029 |
ttaaaaaacaattgttcctgatagaattcaattgtgaatcattatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaattgagtgg |
2158930 |
T |
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| Q |
262 |
gccgcggtgttgggccgtattaaggggtggtgcag |
296 |
Q |
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| T |
2158929 |
gccgcggtgttgggccgtattaagggttggtgcag |
2158895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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