View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17092_low_8 (Length: 505)
Name: NF17092_low_8
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17092_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 52033585 - 52034066
Alignment:
| Q |
19 |
tcgatgtcatagtaaagactcaactcaaagtcacgtccattggatttggaatgtggacggtgctcatcgtaagagtaagtaaaatactagaagatctatg |
118 |
Q |
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| T |
52033585 |
tcgatgtcatagtaaagactcaactcaaagtcacgtccattggatttggaatgtggacggtgctcatcgtaagagtaagtaaaatactagaagatctatg |
52033684 |
T |
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| Q |
119 |
attgggtaatgtaaggcaatgccgtacttggtcttaatttaggccaagtacaatttgacttttgcttatattaaacatctttgattagctattttaaaac |
218 |
Q |
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| T |
52033685 |
attggttaatgtaaggcaatgccgtacttggtcttaatttaggccaagtacaatttgacttttgcttatattaaacatctttgattagctattttaaaac |
52033784 |
T |
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| Q |
219 |
aattcttgattaagatttatttaccttgtctcacgtagacgcgttggtacaatctaatgacatttgttaaagatt------cnnnnnnnnnttataaata |
312 |
Q |
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| T |
52033785 |
aattcttgattaagttttatttaccttctctcatgtagacgcgttggtacaatctaatgacatttgttaaagatttaaaaaaagaaattatttataaata |
52033884 |
T |
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| Q |
313 |
tttggtaagaaatgttgctttttgaagttttaatgtgatgaatacacaattttaaagannnnnnnnnctttgaaattttaaacaagtgcgtcaaggacac |
412 |
Q |
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| T |
52033885 |
tttggtaagaaatgttgctttttgaagttttaatgtgatgaatacacaattttaaagatttttttttctttgaacttctaaacaagtgc--caaggacac |
52033982 |
T |
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| Q |
413 |
ttgttagcatttccctaatttaattgtaaggatgttttatgttgaatcttgggtttgaacgagcgtcacgatatccccctatgc |
496 |
Q |
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| T |
52033983 |
ttgttagcatttccctaatttaattgtaaggatgttttatgttgaatcttgggtttgaacgagcgtcacaatatccccctatgc |
52034066 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 17630267 - 17630217
Alignment:
| Q |
380 |
ctttgaaattttaaacaagtgcgtcaaggacacttgttagcatttccctaa |
430 |
Q |
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||||||| || ||||||||||| ||||||| ||||||||||||||||||| |
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| T |
17630267 |
ctttgaacttctaaacaagtgccccaaggacccttgttagcatttccctaa |
17630217 |
T |
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