View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17092_low_9 (Length: 503)

Name: NF17092_low_9
Description: NF17092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17092_low_9
NF17092_low_9
[»] chr1 (6 HSPs)
chr1 (1-483)||(16064816-16065297)
chr1 (138-312)||(23296942-23297118)
chr1 (356-466)||(23296797-23296907)
chr1 (193-300)||(51004164-51004274)
chr1 (336-410)||(16544053-16544126)
chr1 (194-269)||(3303314-3303390)
[»] chr5 (4 HSPs)
chr5 (1-269)||(29369597-29369882)
chr5 (138-312)||(35505861-35506041)
chr5 (193-266)||(28084449-28084522)
chr5 (197-310)||(28247167-28247283)
[»] chr3 (8 HSPs)
chr3 (1-269)||(21983040-21983325)
chr3 (1-120)||(36545499-36545618)
chr3 (1-120)||(36562696-36562815)
chr3 (194-405)||(36544166-36544380)
chr3 (194-405)||(36563944-36564158)
chr3 (197-269)||(12277280-12277352)
chr3 (193-312)||(3858277-3858399)
chr3 (194-269)||(44791141-44791217)
[»] chr8 (5 HSPs)
chr8 (217-309)||(4023022-4023115)
chr8 (2-90)||(4023126-4023214)
chr8 (187-297)||(45454200-45454312)
chr8 (193-269)||(33359186-33359263)
chr8 (193-297)||(6801185-6801290)
[»] scaffold0023 (1 HSPs)
scaffold0023 (152-269)||(113212-113334)
[»] chr4 (8 HSPs)
chr4 (197-269)||(18903068-18903140)
chr4 (349-410)||(18903224-18903285)
chr4 (194-310)||(46395042-46395161)
chr4 (193-311)||(1143344-1143465)
chr4 (159-310)||(18906331-18906489)
chr4 (144-182)||(56544123-56544161)
chr4 (211-269)||(51970504-51970562)
chr4 (193-269)||(52597074-52597151)
[»] chr2 (1 HSPs)
chr2 (193-297)||(17841755-17841861)
[»] chr6 (1 HSPs)
chr6 (138-245)||(10972773-10972884)
[»] chr7 (6 HSPs)
chr7 (193-311)||(778711-778832)
chr7 (138-182)||(41349804-41349848)
chr7 (152-297)||(2455772-2455925)
chr7 (186-266)||(41349910-41349991)
chr7 (425-481)||(2243178-2243234)
chr7 (197-269)||(47129811-47129883)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 16064816 - 16065297
Alignment:
Q  1 atgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaagaataagccta 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16064816 atgaagaagtagagagatgattggacttgagaaagagcaagacaacttgaccatttcctactatgggaagccacggttttgaaggttaagaataagccta 16064915  T
Q  101 agatatattattactgttaagattattatcg-ttatgaggaatgcatatgaaatttggatgtttttatgcttttcttttacttatattgtattgattatg 199  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16064916 agatatattattactgttaagattattatcggttatgaggaatgcatatgaaatttggatgtttttatgcttttcttttacttatattgtattgattatg 16065015  T
Q  200 taagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgtttagtattgaagtttttggtaactaaaaaaagt 299  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  16065016 taagaaccatgaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgtttagtattgaagtttttggtaactaaaaaaa-- 16065113  T
Q  300 tcttctttgtaccnnnnnnnnnnnnnnttaacagtccatgggtattcctgaatactcgtggatacctcaatatccacgggttacccgtatagtggatacc 399  Q
      |||||||||||              |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16065114 agttctttgtaccaaaaaataaaaaaattaacagtccataggtattcatgaatactcgtggatacctcaatacccacgggttacccgtatagtggatacc 16065213  T
Q  400 cacacgggtacaaaatgggcatgagtatcatatttattcaacgatacaggtacgagtatcatactatccgtactcatggatacc 483  Q
     ||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16065214 tacacgggtacagaatgggcattaatatcatatttattcaacgagacaggtacgagtatcatactatccgtactcatggatacc 16065297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 312
Target Start/End: Complemental strand, 23297118 - 23296942
Alignment:
Q  138 ggaatgcatatgaaatttggatgtttttatgcttttcttttacttata----ttgtattgattatgtaagaaccatcaatttagtatggattaggtatga 233  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||  |    ||||||   |||||| |||| ||| ||||| |||||||||||||||||    
T  23297118 ggaatgcatatgaaatttggatgttttta--cttttattttacttcaaaaatttgtatgacttatgtgagaatcatgaattttgtatggattaggtatga 23297021  T
Q  234 tttataaaatttgaatgcattatttatggatgttt-agtattgaag-tttttggtaactaaaaaaagttcttctttgtacc 312  Q
    ||||||||||||||||  ||||| ||||||||||| |  || |||| |||||||||| | |||||||||||||||||||||    
T  23297020 tttataaaatttgaat-aattatgtatggatgtttaaaaatagaagttttttggtaa-ttaaaaaagttcttctttgtacc 23296942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 23296907 - 23296797
Alignment:
Q  356 cgtggatacctcaatatccacgggttacccgtatagtggatacccacacgggtacaaaatgggcatgagtatcatatttattcaacgatacaggtacgag 455  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||| | |||| |  ||| || ||||||||||||||| ||| ||  | || |||||    
T  23296907 cgtggatacctcaatacccacgggttacccgtatagtgagtacccacatgtgtacgaggtggacaggagtatcatatttatccaatgagtcggggacgag 23296808  T
Q  456 tatcatactat 466  Q
    |||||||||||    
T  23296807 tatcatactat 23296797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 51004164 - 51004274
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttataaaatt-tgaatgcattatttatggatgtttagta-ttgaag-tttttggtaac 289  Q
    ||||||||||||| ||| |||||  ||||||||| ||||||||||| ||||| |||||| ||||| ||||||||||||  | |||||| ||||||||||     
T  51004164 gattatgtaagaatcatgaattttatatggattatgtatgatttatgaaattctgaatggattatgtatggatgtttaaaatttgaagttttttggtaat 51004263  T
Q  290 taaaaaaagtt 300  Q
    |||||||||||    
T  51004264 taaaaaaagtt 51004274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 16544053 - 16544126
Alignment:
Q  336 catgggtattcctgaatactcgtggatacctcaatatccacgggttacccgtatagtggatacccacacgggtac 410  Q
    ||||||||| | ||||||| | || ||| || |||||||| |||| |||||||||||||||||||||| ||||||    
T  16544053 catgggtatccatgaatacccatgaatatcttaatatccatgggt-acccgtatagtggatacccacaagggtac 16544126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 3303314 - 3303390
Alignment:
Q  194 attatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttg-aatgcattatttatggatgttta 269  Q
    ||||||||| || ||| |||||  ||||||||| ||||||||| | ||||||| |||| ||||| ||||||||||||    
T  3303314 attatgtaaaaatcatgaattttctatggattatgtatgatttgtgaaatttggaatggattatgtatggatgttta 3303390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 29369882 - 29369597
Alignment:
Q  1 atgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaagaataagccta 100  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  29369882 atgaagaagtagggagatgattggacttgagaaagagcaagacaacttgaccatttcctactcatggaagccacgattttgaaggttaagaataaaccta 29369783  T
Q  101 agatatattattactgttaagattattatc-gttatgaggaatgcatatgaa------------atttggatgtttttatgcttttcttttactt----a 183  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||||||            |||||||||||||||| ||||||||||||||    |    
T  29369782 agatatattattactattaagattattatcaggtatgaggaatgcatatgaaatttagacgtttatttggatgtttttatacttttcttttacttcaaaa 29369683  T
Q  184 tattgtattgattatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
      |||||| | |||| |||||| ||| ||||| ||||||||||| |||||||||| ||||||||||  ||||| || |||||||||    
T  29369682 atttgtatgggttatataagaatcatgaattttgtatggattagatatgatttatgaaatttgaatagattatgtagggatgttta 29369597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 312
Target Start/End: Complemental strand, 35506041 - 35505861
Alignment:
Q  138 ggaatgcatatgaaatttggatgtttttatgc-ttttcttttacttata----ttgtattgattatgtaagaaccatcaatttagtatggattaggtatg 232  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||  |    |||||| ||||||| ||||| ||| ||||| ||||||||||  ||||    
T  35506041 ggaatgcatatgaaatttggatgtttttattccttttattttacttcaaaaatttgtatggattatgcaagaatcatgaattt-gtatggattatatatg 35505943  T
Q  233 atttataaaatttgaatgcattatttatggatgttt-agtattgaagttttt-ggtaactaaaaaaagttcttctttgtacc 312  Q
    |||||| ||||||||||| ||||| |||| |||||| |  |||||||||||| | ||| ||||| |||||||||||| ||||    
T  35505942 atttatgaaatttgaatgaattatgtatgaatgtttaaaaattgaagtttttcgataattaaaagaagttcttctttatacc 35505861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 28084522 - 28084449
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgt 266  Q
    ||||||||||||| ||| ||||| |||||||||| ||||||||||| ||||||||||| ||||| |||||||||    
T  28084522 gattatgtaagaatcataaattttgtatggattatgtatgatttatgaaatttgaatgaattatgtatggatgt 28084449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 28247167 - 28247283
Alignment:
Q  197 atgtaagaaccatcaatttagtatggattaggtatgatttataaaattt-gaatgcattatttatggatgtttagta-ttgaag-tttttggtaactaaa 293  Q
    |||||| || ||| |||||  ||||||||| ||||||||||| |||||| ||||| ||||| |||| |||||||  | |||||| ||||| |||| ||||    
T  28247167 atgtaaaaatcatgaattttctatggattatgtatgatttatgaaatttggaatggattatatatgaatgtttaaaagttgaagattttttgtaattaaa 28247266  T
Q  294 aaaagttcttctttgta 310  Q
    ||||||| || ||||||    
T  28247267 aaaagttattttttgta 28247283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 21983040 - 21983325
Alignment:
Q  1 atgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaagaataagccta 100  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  21983040 atgaagaagtagggagatgattggacttgagaaagagcaagacaacttgaccatttcctactcatggaagccacgattttgaaggttaagaataaaccta 21983139  T
Q  101 agatatattattactgttaagattattatc-gttatgaggaatgcatatgaa------------atttggatgtttttatgcttttcttttactt----a 183  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||||||            |||||||||||||||| ||||||||||||||    |    
T  21983140 agatatattattactattaagattattatcaggtatgaggaatgcatatgaaatttagacgtttatttggatgtttttatacttttcttttacttcaaaa 21983239  T
Q  184 tattgtattgattatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
      |||||| | |||| |||||| ||| ||||| ||||||||||| |||||||||| ||||||||||  ||||| || |||||||||    
T  21983240 atttgtatgggttatataagaatcatgaattttgtatggattagatatgatttatgaaatttgaatagattatgtagggatgttta 21983325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36545618 - 36545499
Alignment:
Q  1 atgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaagaataagccta 100  Q
    |||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||  |||||||||| || |||||||||||||||| | | |    
T  36545618 atgaagaagtggagagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtcca 36545519  T
Q  101 agatatattattactgttaa 120  Q
    ||||||||||||||| ||||    
T  36545518 agatatattattactattaa 36545499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36562696 - 36562815
Alignment:
Q  1 atgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaagaataagccta 100  Q
    |||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||  |||||||||| || |||||||||||||||| | | |    
T  36562696 atgaagaagtggagagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtcca 36562795  T
Q  101 agatatattattactgttaa 120  Q
    ||||||||||||||| ||||    
T  36562796 agatatattattactattaa 36562815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 194 - 405
Target Start/End: Complemental strand, 36544380 - 36544166
Alignment:
Q  194 attatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgtttagta-ttgaagtttttggtaactaa 292  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||  |||||| |||| ||| | ||||||||||||  | ||||||||||||  || |||    
T  36544380 attatgtaagaatcatgaattttgtatggattaggtatgatttaagaaatttcaatggattttgtatggatgtttaaaagttgaagtttttgacaattaa 36544281  T
Q  293 aa-aaagttcttctttgtaccnnnnnnnnnnnnnntt-aacagtccatgggtattcctgaatactcgtggatacctcaatatccacgggttacccgtata 390  Q
    || ||||||||||||||||||              || || | | ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  36544280 aacaaagttcttctttgtaccaaaaaataaataaattcaaaaattcatgggtattcgtgaatactcgtggataccttaatacccacgggttacccgtata 36544181  T
Q  391 gtggatacccacacg 405  Q
    || |||| |||||||    
T  36544180 gtagataaccacacg 36544166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 194 - 405
Target Start/End: Original strand, 36563944 - 36564158
Alignment:
Q  194 attatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgtttagta-ttgaagtttttggtaactaa 292  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||  |||||| |||| ||| | ||||||||||||  | ||||||||||||  || |||    
T  36563944 attatgtaagaatcatgaattttgtatggattaggtatgatttaagaaatttcaatggattttgtatggatgtttaaaagttgaagtttttgacaattaa 36564043  T
Q  293 aa-aaagttcttctttgtaccnnnnnnnnnnnnnntt-aacagtccatgggtattcctgaatactcgtggatacctcaatatccacgggttacccgtata 390  Q
    || ||||||||||||||||||              || || | | ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  36564044 aacaaagttcttctttgtaccaaaaaataaataaattcaaaaattcatgggtattcgtgaatactcgtggataccttaatacccacgggttacccgtata 36564143  T
Q  391 gtggatacccacacg 405  Q
    || |||| |||||||    
T  36564144 gtagataaccacacg 36564158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 12277352 - 12277280
Alignment:
Q  197 atgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
    ||||||||| | | ||||| ||||| |||| ||||||||||| ||||||||||| ||| | ||||||||||||    
T  12277352 atgtaagaatcgtgaattttgtatgaattatgtatgatttatgaaatttgaatggattctgtatggatgttta 12277280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 3858277 - 3858399
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgtttagta-ttg-aagtttttggtaac 289  Q
    ||||||||||||| ||| |||||  ||||||||| ||||||||||| ||| |||||||  ||||  ||||||||||||  | ||| || |||||||||      
T  3858277 gattatgtaagaatcatgaattttatatggattatgtatgatttatgaaattttgaatagattacgtatggatgtttaaaagttgaaattttttggtatt 3858376  T
Q  290 taaaaaaagttcttctttgtacc 312  Q
    ||||||||||| || ||||||||    
T  3858377 taaaaaaagttattatttgtacc 3858399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 44791217 - 44791141
Alignment:
Q  194 attatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgttta 269  Q
    |||||||||||| ||| |||||  |||| |||| ||||||||||| ||| |||||||  ||||| ||||||||||||    
T  44791217 attatgtaagaatcatgaattttctatgaattatgtatgatttatgaaattttgaattgattatgtatggatgttta 44791141  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 4023115 - 4023022
Alignment:
Q  217 gtatggattaggtatgatttataaaatttgaatgcattatttatggatgtttagta-ttgaagtttttggtaactaaaaaaagttcttctttgt 309  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||  | |||||||||||||||| |||||||| || ||||||||    
T  4023115 gtatggattaggtatgatttatgaaatttgaatggattatgtatggatatttaaaagttgaagtttttggtaattaaaaaaaattattctttgt 4023022  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 4023214 - 4023126
Alignment:
Q  2 tgaagaagtagagagatgattgaaattgagaaagagcaagacaacttgaccatttcctactatgggaagccacgattttgaaggttaag 90  Q
    |||||||||||||||||| ||| | ||| ||||||||| || ||||| ||||||||||| |  ||||| ||||||||||||||||||||    
T  4023214 tgaagaagtagagagatggttggagttgggaaagagcatgataacttaaccatttcctaatcagggaatccacgattttgaaggttaag 4023126  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 45454200 - 45454312
Alignment:
Q  187 tgtattgattatgtaagaaccatcaatttagtatggatta-ggtatgatttataaaatttgaatgcattatttatggatgtttagta-ttgaagtttttg 284  Q
    ||||| || |||||||||| ||| ||||| |||||||||| |||||||||||| ||||||||||  ||||| ||||||||||||  | | ||| ||||||    
T  45454200 tgtatggactatgtaagaatcataaattttgtatggattatggtatgatttatgaaatttgaatagattatgtatggatgtttaaaagtagaactttttg 45454299  T
Q  285 gtaactaaaaaaa 297  Q
    |||| ||||||||    
T  45454300 gtaattaaaaaaa 45454312  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 33359263 - 33359186
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgttta 269  Q
    ||||||||||||| ||| |||||  ||||||||| ||||||||||| ||| |||||||| ||||| ||||||||||||    
T  33359263 gattatgtaagaatcatgaattttctatggattatgtatgatttatgaaattttgaatgaattatgtatggatgttta 33359186  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 6801290 - 6801185
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgtttagta-ttgaagtttttggtaact 290  Q
    |||||||||||||  || |||||  ||||||||| ||||||||||| ||| |||||||| ||||| ||||||||||||  | ||||||||||| |||| |    
T  6801290 gattatgtaagaataatgaattttctatggattatgtatgatttatgaaattttgaatggattatgtatggatgtttaaaacttgaagttttt-gtaatt 6801192  T
Q  291 aaaaaaa 297  Q
    |||||||    
T  6801191 aaaaaaa 6801185  T

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Target: scaffold0023 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 113334 - 113212
Alignment:
Q  152 atttggatgtttttatgcttttcttttacttata----ttgtattgattatgtaagaaccatcaatttagtatggattaggtatgatttataaaa-tttg 246  Q
    |||||||||||||||||||||| ||||||||  |    |||||| | ||||| ||||| ||| |||||  ||||||||| ||||||||||||||| ||||    
T  113334 atttggatgtttttatgcttttattttacttcaagaatttgtatgggttatgcaagaatcatgaattttctatggattatgtatgatttataaaattttg 113235  T
Q  247 aatgcattatttatggatgttta 269  Q
    |||| ||||| ||||||||||||    
T  113234 aatggattatgtatggatgttta 113212  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 18903068 - 18903140
Alignment:
Q  197 atgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
    ||||||||| ||| ||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||    
T  18903068 atgtaagaagcatgaattttgtatggattatgtatgatttatgaaatttgaatggattatgtatggatgttta 18903140  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 18903224 - 18903285
Alignment:
Q  349 gaatactcgtggatacctcaatatccacgggttacccgtatagtggatacccacacgggtac 410  Q
    |||||| | |||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  18903224 gaatacccatggatacctcaatacccacgggttacccgtatagtgggtacccacgcgggtac 18903285  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 46395042 - 46395161
Alignment:
Q  194 attatgtaagaaccatcaatttagtatggattaggtatgatttataaaatttg-aatgcattatttatggatgtttagta-ttgaag-tttttggtaact 290  Q
    ||||||||| || ||| |||||  ||||||||| ||||||||||  ||||||| |||| ||||| |||||||||||| || |||||| |||||||||| |    
T  46395042 attatgtaaaaatcatgaattttctatggattatgtatgatttacgaaatttggaatggattatgtatggatgtttaatagttgaagatttttggtaatt 46395141  T
Q  291 aaaaaaagttcttctttgta 310  Q
    |||||||||| || ||||||    
T  46395142 aaaaaaagttattatttgta 46395161  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 1143344 - 1143465
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgttt-agtattgaag-tttttggtaac 289  Q
    ||||||||||||| ||| |||||  |||||||||  |||| ||||| ||| |||||||| ||||| ||||||||||| |  ||||||| ||||||||||     
T  1143344 gattatgtaagaatcatgaattttctatggattatatatggtttatgaaattttgaatggattatgtatggatgtttaaaaattgaagttttttggtaat 1143443  T
Q  290 taaaaaaagttcttctttgtac 311  Q
    ||||||||||| || |||||||    
T  1143444 taaaaaaagttattatttgtac 1143465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 18906489 - 18906331
Alignment:
Q  159 tgtttttatgcttttcttttacttata----ttgtattgattatgtaagaaccatcaatttagtatggattaggtatgatttataaaattt-gaatgcat 253  Q
    ||||||||||||||| ||||||||  |    |||||| ||||||| ||||| ||| |||||  ||||||||| |||||||| || |||||| ||| | ||    
T  18906489 tgtttttatgcttttattttacttcaagaatttgtatggattatgcaagaatcatgaattttctatggattatgtatgattgatgaaattttgaagggat 18906390  T
Q  254 tatttatggatgtttagta-ttgaagttttt-ggtaactaaaaaaagttcttctttgta 310  Q
    |||  |||||||||||  | ||||||||||| ||||| ||||||||||| |||||||||    
T  18906389 tatgcatggatgtttaaaagttgaagttttttggtaattaaaaaaagttattctttgta 18906331  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 56544123 - 56544161
Alignment:
Q  144 catatgaaatttggatgtttttatgcttttcttttactt 182  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  56544123 catatgaaatttggatgtttttatgcttttattttactt 56544161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 51970504 - 51970562
Alignment:
Q  211 aatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
    ||||| |||||||||| ||||||||||  ||||||||||| ||||| |||| |||||||    
T  51970504 aattttgtatggattatgtatgatttacgaaatttgaatggattatgtatgaatgttta 51970562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 52597074 - 52597151
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgttta 269  Q
    ||||||||||||| ||| |||||  ||||||||| ||||||||||| ||| |||||||  ||| | ||||||||||||    
T  52597074 gattatgtaagaatcatgaattttctatggattatgtatgatttatgaaattttgaatagattgtgtatggatgttta 52597151  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 17841755 - 17841861
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgtttagta-ttgaagtttttggtaact 290  Q
    ||||||||||||| ||| |||||  ||||||||| ||||||||||| ||| |||||||| ||||| ||||||||||||  | ||||||||||||| || |    
T  17841755 gattatgtaagaatcatgaattttatatggattatgtatgatttatgaaattttgaatggattatgtatggatgtttaaaagttgaagtttttggcaatt 17841854  T
Q  291 aaaaaaa 297  Q
    |||||||    
T  17841855 aaaaaaa 17841861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 10972884 - 10972773
Alignment:
Q  138 ggaatgcatatgaaatttggatgtttttatgcttttcttttactt----atattgtattgattatgtaagaaccatcaatttagtatggattaggtatga 233  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||    |  |||||| ||||| ||||||| ||| |||||  ||||||||| ||||||    
T  10972884 ggaatgcatataaaatttagatgtttttatgcttttgttttacttcaagaatttgtatggattaagtaagaatcatgaattttctatggattatgtatga 10972785  T
Q  234 tttataaaattt 245  Q
    | ||| ||||||    
T  10972784 tatatgaaattt 10972773  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 778711 - 778832
Alignment:
Q  193 gattatgtaagaaccatcaatttagtatggattaggtatgatttat-aaaatttgaatgcattatttatggatgtttagta-ttgaagtttt-tggtaac 289  Q
    ||||||||||||| ||| |||||  |||||||||  |||||||||| ||| |||||||  ||||| ||||||||||||  | |||||||||| ||||||     
T  778711 gattatgtaagaatcatgaattttctatggattatatatgatttatgaaattttgaattgattatgtatggatgtttaaaatttgaagttttatggtaat 778810  T
Q  290 taaaaaaagttcttctttgtac 311  Q
    ||||||||||| || |||||||    
T  778811 taaaaaaagttattatttgtac 778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 41349804 - 41349848
Alignment:
Q  138 ggaatgcatatgaaatttggatgtttttatgcttttcttttactt 182  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  41349804 ggaatgcatatgaaatttggatgtttttatgattttattttactt 41349848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 2455772 - 2455925
Alignment:
Q  152 atttggatgtttttatgcttttcttttacttata----ttgtattgatt-atgtaagaaccatcaatttagtatggattaggtatgatttataaaattt- 245  Q
    |||||||||||||||||||||| ||||||||  |    ||||||  ||| ||| ||||| ||| |||||  ||||||||| |||||||| || ||||||     
T  2455772 atttggatgtttttatgcttttattttacttcaagaatttgtatgaatttatgaaagaatcatgaattttctatggattatgtatgattaatgaaatttt 2455871  T
Q  246 gaatgcattatttatggatgtttagta-ttgaag-tttttggtaactaaaaaaa 297  Q
    ||||| ||||| ||||||||||||  | |||||| |||||||||| ||||||||    
T  2455872 gaatggattatgtatggatgtttaaaagttgaagttttttggtaattaaaaaaa 2455925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 41349910 - 41349991
Alignment:
Q  186 ttgtattgattatgtaagaaccatcaatttagtatggatta-ggtatgatttataaaatttgaatgcattatttatggatgt 266  Q
    |||||| ||||||||||||| ||| ||||| || ||||||| | |||||||||| |||| |||||| ||| | |||||||||    
T  41349910 ttgtatggattatgtaagaatcatgaatttcgtttggattatgatatgatttatgaaatgtgaatgaattgtgtatggatgt 41349991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 2243178 - 2243234
Alignment:
Q  425 tatcatatttattcaacgatacaggtacgagtatcatactatccgtactcatggata 481  Q
    |||||||||||| |||||  || |  |||||||||||||||||||||| ||||||||    
T  2243178 tatcatatttatccaacgggacggagacgagtatcatactatccgtacccatggata 2243234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 47129811 - 47129883
Alignment:
Q  197 atgtaagaaccatcaatttagtatggattaggtatgatttataaaatttgaatgcattatttatggatgttta 269  Q
    ||||||||| ||| | ||| ||||| |||| ||||||||||| ||||||||||| ||||| ||  ||||||||    
T  47129811 atgtaagaatcatgatttttgtatgaattatgtatgatttatgaaatttgaatggattatataaagatgttta 47129883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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