View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_high_1 (Length: 620)
Name: NF17093_high_1
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Original strand, 5540790 - 5541381
Alignment:
| Q |
10 |
attatactgaaaacttaggaaatgaacataagagatgattaacttactaagtgcttgagtcactctacttttgtctggtgttatgaatctagtaggtttc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5540790 |
attatactgaaaacttaggaaatgaacataagagatgattaacttactaagtgcttgagtcactctacttttgtctggtgttatgaatctagtaggtttc |
5540889 |
T |
|
| Q |
110 |
acaatttttgctggcccacatgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttgacagttttattagttgtaccagctctaccga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
5540890 |
acaatttttgctggcccacatgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttgacagttttgttagttgtaccagctctatcga |
5540989 |
T |
|
| Q |
210 |
cgctgacttgaaatgctgaaaccgcatttattggatcctgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5540990 |
cgctgacttgaaatgctgaaaccgcatttattggatcctgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgt |
5541089 |
T |
|
| Q |
310 |
ccctggaagtaagtctatgactgttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctccc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541090 |
ccctggaagtaagtctatgactgttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctccc |
5541189 |
T |
|
| Q |
410 |
acgatggcccatattacctcgttatttgcccaattccagcctaatgaccatccaggtgccgatatatgacgataacgttggaagttgttcattgtaacaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5541190 |
acgatggcccatattacctcgttatttgcccaattccagcctaatgaccatccaggtgccgatatatgacgataacgttggaagttgttcattgtaacaa |
5541289 |
T |
|
| Q |
510 |
cagcctgttagacaaagaggaaacttgttagcagtagatatcgaaccttagaccttctacataatactcctttagtgtcccaacacgtactg |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5541290 |
cagcctgttagacaaagaggaaacttgttagcagtagatatcgaaccttagaccttctacataatactcctttagtgtcccaacacgtactg |
5541381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 10 - 507
Target Start/End: Complemental strand, 5550001 - 5549504
Alignment:
| Q |
10 |
attatactgaaaacttaggaaatgaacataagagatgattaacttactaagtgcttgagtcactctacttttgtctggtgttatgaatctagtaggtttc |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||| || |
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|
| T |
5550001 |
attatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgttgtaaatttagtaggtgtc |
5549902 |
T |
|
| Q |
110 |
acaatttttgctggcccacatgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttgacagttttattagttgtaccagctctaccga |
209 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || || ||||||||||| | |
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|
| T |
5549901 |
ccagtttttgctcgtccacatgtataacctggtccaggtgctttcagggtgaaattttgcggcagtttgacagttttattggtcgtgccagctctaccaa |
5549802 |
T |
|
| Q |
210 |
cgctgacttgaaatgctgaaaccgcatttattggatcctgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgt |
309 |
Q |
| |
|
| | || ||||||| | ||| |||||| ||||||||||| |||||||||| || || || ||| |||||||||||||| |||||||||| | || || |
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|
| T |
5549801 |
caataacctgaaatgacgcaactgcatttgttggatcctgtgcccatgagctgagtactccacctttgcaacaatttgcagtttgttgattgtagggtgt |
5549702 |
T |
|
| Q |
310 |
ccctggaagtaagtctatgactgttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctccc |
409 |
Q |
| |
|
|| |||||||| |||| ||| ||||||| ||||||||||||||| |||||| |||||||||| || |||||||||||| ||||||||||||||| ||| |
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|
| T |
5549701 |
tccgggaagtaaatctacgaccgttggatcttttttacagcaatgcgggatgtttcctttaaatttcgaacaatctccttgttcagttgtctgacttcct |
5549602 |
T |
|
| Q |
410 |
acgatggcccatattacctcgttatttgcccaattccagcctaatgaccatccaggtgccgatatatgacgataacgttggaagttgttcattgtaac |
507 |
Q |
| |
|
|| ||| |||||||||||| || |||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
5549601 |
accatgttccatattacctctttctttgcccatgtccatcctaatgaccatccaggtgacgatatatgacgatactgttggaagttgttcatcgtaac |
5549504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 48 - 507
Target Start/End: Complemental strand, 5007408 - 5006949
Alignment:
| Q |
48 |
ttaacttactaagtgcttgagtcactctacttttgtctggtgttatgaatctagtaggtttcacaatttttgctggcccacatgtataacctggtccagg |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| || || ||||||| ||||||||||||| |||||||| |||||||| ||||| || |
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|
| T |
5007408 |
ttaacttactgagtgcttgagtcactctccttttgtctggttgaataaactgagtaggtctcacaatttttgccggcccacaagtataaccgggtcccgg |
5007309 |
T |
|
| Q |
148 |
tgctttcaaggtgaaatttttcggcagtttgacagttttattagttgtaccagctctaccgacgctgacttgaaatgctgaaaccgcatttattggatcc |
247 |
Q |
| |
|
|| ||||||||||| ||||| |||| ||| |||||||| || || || || |||||||| || |||| |||||| || ||| || | | ||||| |
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|
| T |
5007308 |
ggcattcaaggtgaagtttttaggcactttaacagttttgtttgtggttccggctctaccaacactgatttgaaacgccccaactgccatggtaggatct |
5007209 |
T |
|
| Q |
248 |
tgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgtccctggaagtaagtctatgactgttggatgttttttac |
347 |
Q |
| |
|
|| ||||||| ||||| ||||| ||| |||| |||||||||||||| ||||| | |||||| || |||||||| |||| || ||||||| ||||||| |
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|
| T |
5007208 |
tgagcccatgaactaagcacaccacctttgcagcaatttgcaatttgctgattgtaaggcgttccgggaagtaaatctacaacggttggattctttttac |
5007109 |
T |
|
| Q |
348 |
agcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctcccacgatggcccatattacctcgttatttgcccaattcca |
447 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||| |||| || ||||| |||||| || ||| |||||||| || |||||||| |||| |
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|
| T |
5007108 |
agcaatgtggaacatttcctttaaattttgaacaatcaccttgttccgtggtctgtgatcccaccatactccagattacctccttttttgcccatgtcca |
5007009 |
T |
|
| Q |
448 |
gcctaatgaccatccaggtgccgatatatgacgataacgttggaagttgttcattgtaac |
507 |
Q |
| |
|
|||| |||||| ||||| | | || |||||||| ||||||| |||||||| ||||| |
|
|
| T |
5007008 |
tcctagtgaccagccaggggaagcgatgtgacgatattgttggaaattgttcatcgtaac |
5006949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 128 - 517
Target Start/End: Original strand, 45210100 - 45210489
Alignment:
| Q |
128 |
catgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttga---cagttttattagttgtaccagctctaccgacgctgacttgaaatg |
224 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||||| | |||| | ||| ||||||| ||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
45210100 |
catgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgtta-ttg--ccagctctaccgacactgacttgaaacg |
45210196 |
T |
|
| Q |
225 |
ctgaaaccgcatttattggatcctgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgtccctggaagtaagtc |
324 |
Q |
| |
|
||| ||| |||||| ||||| ||| |||||| || || ||||| ||| |||| |||||||||| ||||| ||||| ||||| || || | ||||| |
|
|
| T |
45210197 |
ctgcaactgcatttggcggatcttgtgcccatgttcttagtacaccacctttgcagcaatttgcaaattgtttattatagggcgttccagggtgcaagtc |
45210296 |
T |
|
| Q |
325 |
tatgactgttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctcccacgatggcccatatt |
424 |
Q |
| |
|
||| | |||||||| || ||||| |||||||||| |||| | |||| | ||| ||||||||| | ||||||| | |||||||| | |||||||| |
|
|
| T |
45210297 |
tataattgttggatccttcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccctcccaccacagcccatatg |
45210396 |
T |
|
| Q |
425 |
acctcgttatttgcccaattccagcctaatgaccatccaggtgccgatatatgacgataacgttggaagttgttcattgtaacaacagcctgt |
517 |
Q |
| |
|
| ||| || | | ||||| |||| |||| ||||||| ||||| | |||||||||||| |||| |||||||| |||||||| || |||||| |
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|
| T |
45210397 |
atctctttctctacccaactccatcctacgaaccatccgggtgctgttatatgacgatattgttgaaagttgtttattgtaactaccgcctgt |
45210489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 24487589 - 24487644
Alignment:
| Q |
333 |
ttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcct |
388 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
24487589 |
ttggatcttttttacaataatgtgggatggtttccttaaattttgaacaatctcct |
24487644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 25662100 - 25662191
Alignment:
| Q |
110 |
acaatttttgctggcccacatgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttgacagttttattagttgtaccagc |
201 |
Q |
| |
|
|||||||| || || ||||| |||||||| || ||||||||| | | ||||||||| | |||| ||| ||||||||||||||||| ||||| |
|
|
| T |
25662100 |
acaattttcgcaggaccacaagtataaccaggaccaggtgctctgagtgtgaaatttcttggcaatttaacagttttattagttgttccagc |
25662191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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